RNA id: AMCG00006920


Basic Information

Item Value
RNA id AMCG00006920
length 1180
RNA type mRNA
GC content 0.48
exon number 4
gene id AMCG00006920
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 25888257 ~ 25893080 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TAGAAACCGAGAAGATGGCCTGTTTTAATAGCTAGATACCCAGCGACTGCACATGTGAGTTTACACTTTTGTTACAATCGTGAGTTTAGTTGTTCCTGTTTCTAACTTCCTCTTTTATCGCTATAAAACCGAAAGCAACTAGAAACTAACAACCTAGTCAACACCGATACAGGCTTTAACGCGTCCATTTGCTCCGTTGTGTCTCCGTGTTGCGTTTAAACATTCGCACTGGGTTTGGACGGTCTTCACTTGCTTGTCTTTTTTTACGCGCGGTCTGTttcacaagtaaaaaaaaaacaatgtcgCGTTCAACTCCGGCTGTGCCTTGTCGCTCACCTTTTGCTCAATAACCCTCTTTTCTCCTCCTGTATGGGACCCGGGATTGGACCGGTTCTGCGGTGAAGTGGAGACGTTGAGCGACTGTTGGACAAACACTATGGAGTACATCCACAGCAGAGATTACAGCACAAGCTTAATCCTCCTCAGCTTCTTGAAGCAGCAGGGTTGCAAGAATGAGGAATTCGCCAAGGAACTGGAAAGCTTAGGGGAGGAACTGAAATTGAGCAGGGACGTCAATTCAAATCATGGCGACTACGGCAGGGACTGCTACTACGACGATGATGATGGGGAGCTGCAGGCCGACGGGAACTTTTGTCCTTTTTCAAACCTCAGCGGTTTGGCAAGAGGGATGCAGGCTGATGTCCGAGAATCCCTTCCAATGAATGCGGTAGATGAAGCAGCACTGAGGAACGTGGCTGTGGGCCTCATTGAGATTGCTGACCGGCTGGAGCAGAGTGTCCTTACTCGGGCCTCAGAGAATTTAACCAGGAGACTGCAGAACCTTTCTCCGGAGGACTGGCACAACACTCTATCCTATGAGGTGCAGGATCTGATGCAGAGACGGCTGCCAACGCTGTGCAATCTCCCCCAGGAGAGAGTCATGCTGGTCCTGACCATGGCTCTGGTGAAGCAAGTCTGCGAGCGAGTCCCCACCCTCCTGCACAGCCTCTTTAGTACAGCGGTGCAGTACATCAGTGCCATACGGCCCCGGTTTACATGAAACGCTAGATTGTTTGCCAGTTTTAAGCCTTCATTTCAACTGccggtttgtttttcttcagaaaaacaaaaaaaacatggaaaatttaaaaataatttgaactatgtatatatagctttt

Function

GO:

id name namespace
GO:0042981 regulation of apoptotic process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU142052 lncRNA downstream 20978 25866385 ~ 25867279 (-) True G113431
TU142000 lncRNA downstream 142272 25741068 ~ 25745985 (-) True G113395
TU142003 lncRNA downstream 142767 25741068 ~ 25745490 (-) False G113395
TU141998 lncRNA downstream 149390 25738554 ~ 25738867 (-) True G113393
TU141995 lncRNA downstream 168682 25719362 ~ 25719575 (-) True G113391
TU142099 lncRNA upstream 102561 25995641 ~ 25995929 (-) True G113468
TU142110 lncRNA upstream 108366 26001446 ~ 26038323 (-) True G113479
TU142114 lncRNA upstream 108366 26001446 ~ 26010499 (-) False G113479
TU142233 lncRNA upstream 1166289 27059369 ~ 27059594 (-) True G113573
TU142246 lncRNA upstream 1262455 27155535 ~ 27155857 (-) True G113586
AMCG00006915 mRNA downstream 40772 25838755 ~ 25847485 (-) True AMCG00006915
AMCG00006914 mRNA downstream 109639 25747136 ~ 25778618 (-) True AMCG00006914
AMCG00006913 mRNA downstream 152376 25725239 ~ 25735881 (-) True AMCG00006913
AMCG00006909 mRNA downstream 216514 25545313 ~ 25671743 (-) True AMCG00006909
AMCG00006908 mRNA downstream 369934 25516575 ~ 25518323 (-) True AMCG00006908
AMCG00006919 mRNA upstream 6471 25899551 ~ 25911582 (-) True AMCG00006919
AMCG00006918 mRNA upstream 44627 25937707 ~ 25949127 (-) True AMCG00006918
AMCG00006922 mRNA upstream 83410 25976490 ~ 25993105 (-) True AMCG00006922
AMCG00006923 mRNA upstream 199817 26092897 ~ 26105386 (-) True AMCG00006923
AMCG00006925 mRNA upstream 241091 26134171 ~ 26140819 (-) True AMCG00006925
TU141596 other downstream 2481050 23404175 ~ 23407207 (-) True G113050
TU140946 other downstream 4938421 20854057 ~ 20949836 (-) False AMCG00006813
TU140776 other downstream 5652051 20235856 ~ 20236206 (-) True G112420
TU140642 other downstream 6252332 19633237 ~ 19635925 (-) False AMCG00006774
TU140430 other downstream 7547047 18339270 ~ 18341210 (-) False AMCG00006754
TU142176 other upstream 606935 26500015 ~ 26500681 (-) True G113530
TU142323 other upstream 1509520 27402600 ~ 27527348 (-) True G113645
TU142485 other upstream 2374182 28267262 ~ 28292598 (-) False G113775
TU142484 other upstream 2398375 28291455 ~ 28292598 (-) True G113775
TU142549 other upstream 2818139 28711219 ~ 28812548 (-) True G113833

Expression Profile