RNA id: AMCG00006923


Basic Information

Item Value
RNA id AMCG00006923
length 2351
RNA type mRNA
GC content 0.55
exon number 6
gene id AMCG00006923
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 26092897 ~ 26105386 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGGGTCACGAGATGCTGGAACTTCAGAGGACGCGCATGAAGGAGGAGATCCGGGAGTACAAGTTCCGAGAGGCCCGACTGTTACAGGACTACACCGAGCTGGAAGAGGAGAACATTATGCTGCAGAAACTGGTCTCCACTCTCAAACAGAATCAGGTGGAGTATGAAGGCCTCAAGCATGAGATCAAgtgcctggaggaggagacggtcCTGCTAAATAGCCAGCTGGAGGATGCCATCCGCTTAAAGGAGATTGCCGCTAgccagctggaggaggccctGGACACGCTGAAGAATGAGCGGGAGCAGAAGAACAACTTGCGCAAGGAGCTCTCCCAGTACATCAGCATGAGTGACAGCATGTACAACAACCACCTCAGCATCTCTGTGGATGGCCTCAAGTTCAGCGAGGAAGCCAATGGCACACCCAACAATGATGACAAGTGCAACGGCCATGTTCATGGCTCCCTGGCCAAGCTCAATGGCGACTACCGTGCTTCCACAGCCAGAAAGGGGGAGGCCTTGCACCCTGTCTCAGACCTCTTCAGTGAACTCAACCTCTCGGAGATGCAGAAGCTTAAGCAACAGCTCCTACAGGTGGAACGGGAGAAAGCCATCCTCCTTTCCAACCTGCAGGAGTCCCAGACGCAGCTGGAGCACACAAAGGGGGCATTAACTGAGCAGCATGAAAGAGTGCACCACCTCACAGAGCACGTCAATGCCATGAAGCGCCTCCAGAACAACAAAGAGCTCAGCATGGACCTTGAGACGGAGAAGGCCGCTCACGACTCGGCCCAGGATGGCCATGATTATGAGGTGGACATCAACGGGCTGGAGATCCTGGAGTGCAAGTACAAAGTAGCTGTCACAGAGGTGATCGACCTCAAGGCAGAGCTCAAGGCCCTGAAGGAGAAGTATAACCAGTGTTTAGAGAGCTACACAGATGAGAAGTCCAAGTGTGAGAGCAAAGTACAGGTTCTGGACGAGCAAGTGACCCGGCTTGAGAAAGTCTATAAAGAGAGCAGGGAGCGGATCACAAACTTAGAGGCTGAGCTGCAGACAATGACTGGGATGGCCAACGAGAATCACAACACCCTCAATGCTGCACAGGATGAGTTGGTGACCTTCAGTGAGGAGCTTGCCCAGCTCTACCACCATGTCTGCCTCTGCAACAACGAGACACCCAATAGGGTTATGCTAGACTACTATCGTCAGAGTCGGGTGACACGGAGTGGGAGCCTGAAGGGGCCAGATGACCCCAGAGGGTTGCTTTCTCCCAGGCTTGCCCGCCGAGCCATGGTGGCCTCCACAGAAGCCAGAAGTCCCATAGAGCCAGCTCCCAAAGACCCTGCTGAGGCTAGTAAGGAGCAAAGTCAGAGCCCCACGCGGACCCCTACGGTGTCACCCGTCATAACCGCCCCGCCATCTTCTCCCGTTACCGAGCCCAGTGACCTCCGCAAGGAGCCCATGAACATTTACAACCTCAATGCCATTATTAGGGACCAGATCAAGCACCTGCAGAAAGCAGTGGACCGATCCCTGCAGCTCTCACGGCAGAGGGCGGCTGCCAGGGAGCTCGCCCCCATGATTGACAAGGATAAGGAGGCACTGATGGAGGAGATCCTGAAGCTGAAGTCCCTGCTCAGCACCAAACGGGAGCAGATAGCCACACTGCGACTGGTCTTGAAAGCCAACAAACAGACAGCCGAAGTTGCCCTGGCAAACCTGAAAAGCAAATATGAGAACGAGAAGTCAATGGTGACAGAAACAATGATGAAGTTGCGTAATGAATTAAAGGCTCTCAAAGAGGATGCTGCCACCTTCTCCTCCTTAAGAGCAATGTTTGCGACAAGGTGCGACGAGTATGTTACCCAGCTCGATGAAATGCAGCGGCAATTGGCGGCTGCAGAGGACGAGAAGAAGACCCTGAATTCACTCCTGCGCATGGCCATTCAGCAGAAACTGGCCCTCACCCAGCGGCTGGAGGACCTGGAGTTCGACCACGAGCAGTCGCACCGCAGCCGGGGCAAGGTGGCCAAGATCAAGAGCAGCACTCCTAAAGTAAGTCGAAAGGCAGCAGCCAGCTCGCCCTTCCCAGCAGCCCACACACCGGCAACTACAGTAGACAGCCCCCCAGCACTCCTAGGCAGCCCGCCTTCCCTTGAAGCCCACAACAGACACTACCCGTCTCTCGGTTGTAGAACCCCGGCCCTCTGCTGTACTGTGCCGGTCACCTGTACTCGGGACTCGGCCATCTTCGCTGGCCACTGCCAGGCCTGTCACAGATATGCCACCATGTACCCTCTTTACTCCTCCTACCACTCCTGGCCCATCGAACCCCTACACCCATGA

Function

GO: NA

KEGG:

id description
K18739 BICD; protein bicaudal D

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU142110 lncRNA downstream 54574 26001446 ~ 26038323 (-) True G113479
TU142114 lncRNA downstream 82398 26001446 ~ 26010499 (-) False G113479
TU142099 lncRNA downstream 96968 25995641 ~ 25995929 (-) True G113468
TU142052 lncRNA downstream 225618 25866385 ~ 25867279 (-) True G113431
TU142000 lncRNA downstream 346912 25741068 ~ 25745985 (-) True G113395
TU142233 lncRNA upstream 953983 27059369 ~ 27059594 (-) True G113573
TU142246 lncRNA upstream 1050149 27155535 ~ 27155857 (-) True G113586
TU142247 lncRNA upstream 1059793 27165179 ~ 27165398 (-) True G113587
TU142308 lncRNA upstream 1165073 27270459 ~ 27363030 (-) True G113631
TU142352 lncRNA upstream 1694552 27799938 ~ 27800294 (-) True G113667
AMCG00006922 mRNA downstream 99792 25976490 ~ 25993105 (-) True AMCG00006922
AMCG00006918 mRNA downstream 143770 25937707 ~ 25949127 (-) True AMCG00006918
AMCG00006919 mRNA downstream 181315 25899551 ~ 25911582 (-) True AMCG00006919
AMCG00006920 mRNA downstream 199817 25888257 ~ 25893080 (-) True AMCG00006920
AMCG00006915 mRNA downstream 245412 25838755 ~ 25847485 (-) True AMCG00006915
AMCG00006925 mRNA upstream 28785 26134171 ~ 26140819 (-) True AMCG00006925
AMCG00006924 mRNA upstream 78865 26184251 ~ 26185762 (-) True AMCG00006924
AMCG00006926 mRNA upstream 87003 26192389 ~ 26361451 (-) True AMCG00006926
AMCG00006929 mRNA upstream 503157 26608543 ~ 26639948 (-) True AMCG00006929
AMCG00006932 mRNA upstream 1203506 27308892 ~ 27309170 (-) True AMCG00006932
TU141596 other downstream 2685690 23404175 ~ 23407207 (-) True G113050
TU140946 other downstream 5143061 20854057 ~ 20949836 (-) False AMCG00006813
TU140776 other downstream 5856691 20235856 ~ 20236206 (-) True G112420
TU140642 other downstream 6456972 19633237 ~ 19635925 (-) False AMCG00006774
TU140430 other downstream 7751687 18339270 ~ 18341210 (-) False AMCG00006754
TU142176 other upstream 394629 26500015 ~ 26500681 (-) True G113530
TU142323 other upstream 1297214 27402600 ~ 27527348 (-) True G113645
TU142485 other upstream 2161876 28267262 ~ 28292598 (-) False G113775
TU142484 other upstream 2186069 28291455 ~ 28292598 (-) True G113775
TU142549 other upstream 2605833 28711219 ~ 28812548 (-) True G113833

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00025291 False 2511 mRNA 0.50 11 NC_007129.7 12058403 ~ 12118907 (+)