RNA id: AMCG00006928


Basic Information

Item Value
RNA id AMCG00006928
length 1593
RNA type mRNA
GC content 0.49
exon number 10
gene id AMCG00006928
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 26234852 ~ 26260252 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aTTGAGGGAGCAGAGCATTTCTGTGAGATTCCGGAAGAGGGCAACCGAAAAAAGGAGCAGAGCTCACCAGACAGAGATGTCAAGAACAAGCTGGCATACTGCGTGACCGATGTCCCACCATGGTACCTGTGCATCATTCTTGGGACTCAGCACTACCTGACTGCATTTGGTGGGATTATTGCCATTCCCCTAATCCTATCAAGAGCGCTGTGCCTGGAGCATGATTCCCTCACACAAAGCCACCTTATCAGCACCATCTTTTTTGTGTCGGGTATTTGCACCTTACTTCAGGTCACCTTCGGAGTGAGCTCCCCTGAGTACATAGAAGTATGGCAGAGCAGGATTCGAGAGCTGCAGGGATCTATCATGGTGGCATCCTGTTTCCAGATTGTTGTTGGATTTTCTGGTCTCATCGGCCTCTTCATGAAGTTTATAGGCCCACTGACCATCGCAcccaccatctctctcattgGGCTTTCACTGTATGATTCAGCTGGGAATGATGCAGGGAAGCACTGGGGCATTGCATCAATGTGTgtgctCCTGGGAATCACCTTGTCATGGCTTGTTTGTTATATCCTCACTGAGTACAATGTCTTCCCATCAGACTCCAGGCACTATGGTCACTTTGCTCGCACAGATCTGAAAGGAGATGTACTGGCCCAAGCACCCTGGTTCAGATTTCCTTACCCAGGTCAATGGGGTGTTCCAACTGTCAGCCTTGCAGGGGTGTTTGGGATCCTGGCAGGGGTGATCTCTTCCATGGTAGAGTCTGTTGGGGATTACCATGCCTGTGCAAGACTGTCCGGGGCGCCTCCTCCACCCAAACATGCCATTAACCGAGGAGTGGGCATTGAAGGCATTGGCTGCCTGTTGGCAGGAGCATGGGGGACAGGCAATGGGACCACTTCCTACAGTGAGAACGTGGGAGCACTGGGCATCACTAAGGTGGGTAGCCGCATGGTGATTGTTGCCAGTGGGATCTTGATGGTAATTATGGGAATGTTTGGGAAAGTTGGAGCCATTTTCACCACAATCCCAGCACCTGTGATTGGAGGGATGTTCTTAGTCATGTTTGGAGTCATTTCTGCTGCTGGAGTAGCAAACTTACAGTATGCAGATATGAATTCATCCCGGAATCTCTTTATTTTTGGATTTTCCATGTTTTCTGCATTGGTGATTCCCAACTGGATAAATAAGAACCCAAAAGCTATAGAAACTGGTGTAATTGAATTGGACCAAGTGCTCCTGGTTCTGTTGACTACCAGCATGTTTGTGGGGGGGTTCTTTGGATTTATTCTGGATAACACCATCCCAGGGTCAAAAAAAGAACGGGGGATTATCGCTTGGAATGAAGCTCACCATGAAGACTCTGATGAGACACTTGAGAGCGGGGAAGTCTATGACCTACCCTTTAACATTAACTCCCGCTTCTTCTCTGCACCATGGGTGCGATACATCCCCTTCTGTCCCAAGCCTAAAGCAAGCCAGCACCAACAAACCATAGTAGGCAATGACTCAGGTTTATCCAAGGAGAACAGAAGTGTTGAGCAGTCAGACCACACACAGTTCAGTATCAATACACAATTCTAA

Function

GO:

id name namespace
GO:0006810 transport biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU142100 lncRNA upstream 238588 25996047 ~ 25996264 (+) True G113469
TU142098 lncRNA upstream 238943 25995644 ~ 25995909 (+) True G113467
TU142028 lncRNA upstream 340218 25892657 ~ 25894634 (+) True G113409
TU141999 lncRNA upstream 488993 25740983 ~ 25745859 (+) True G113394
TU141987 lncRNA upstream 510181 25722881 ~ 25724671 (+) True G113383
TU142180 lncRNA downstream 294435 26554687 ~ 26554909 (+) True G113534
TU142183 lncRNA downstream 347407 26607659 ~ 26640179 (+) True G113537
TU142196 lncRNA downstream 384504 26644756 ~ 26645011 (+) True G113541
TU142198 lncRNA downstream 390499 26650751 ~ 26651028 (+) True G113543
TU142201 lncRNA downstream 444984 26705236 ~ 26705468 (+) True G113546
AMCG00006927 mRNA upstream 31111 26196317 ~ 26203741 (+) True AMCG00006927
AMCG00006921 mRNA upstream 262740 25949686 ~ 25972112 (+) True AMCG00006921
AMCG00006917 mRNA upstream 297282 25912355 ~ 25937570 (+) True AMCG00006917
AMCG00006911 mRNA upstream 372987 25851405 ~ 25861865 (+) True AMCG00006911
AMCG00006912 mRNA upstream 398242 25829474 ~ 25836610 (+) True AMCG00006912
AMCG00006930 mRNA downstream 444528 26704780 ~ 26706164 (+) True AMCG00006930
AMCG00006931 mRNA downstream 510274 26770526 ~ 26770852 (+) True AMCG00006931
AMCG00006933 mRNA downstream 1063981 27324233 ~ 27325720 (+) True AMCG00006933
AMCG00006936 mRNA downstream 1355883 27616135 ~ 27627333 (+) True AMCG00006936
AMCG00006937 mRNA downstream 1550933 27811185 ~ 27831056 (+) True AMCG00006937
TU142014 other upstream 401910 25815055 ~ 25832942 (+) True G113400
TU141973 other upstream 616407 25618067 ~ 25618445 (+) True G113369
TU141848 other upstream 1647733 24509003 ~ 24587119 (+) False AMCG00006893
TU141783 other upstream 1898936 24304779 ~ 24335916 (+) False AMCG00006884
TU141703 other upstream 2198740 24032113 ~ 24036112 (+) False AMCG00006878

Expression Profile