RNA id: AMCG00006933


Basic Information

Item Value
RNA id AMCG00006933
length 1488
RNA type mRNA
GC content 0.47
exon number 1
gene id AMCG00006933
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 27324233 ~ 27325720 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCCAATTCTACCTACACTAATGCCTCTCAAGACAATTACACAATGTCCATTCCAGAGAGCCCCTACAAGACAGTAGAGATTGTTTTCATTGTCCTGGTAGCAGGATCATTGAGTCTTGTGACTGTTATTGGAAACATCCTGGTGATGGTTTCCATTAAAGTCAACAGGAATCTGCAAACTGTCAACAACTACTTCCTCTTCAGTCTGGCCTGTGCAGACCTTATCATTGGGGTTTGCTCCATGAACCTCTACACAGTCTACACCGTTATTGGGTATTGGCCTCTGGGGCCTGTGGTCTGTGATCTGTGGTTGGCCTTGGATTATGTGGTCAGCAATGCTTCAGTGATGAACCTTCTCATCATCAGTTTTGACCGATATTTCTGTGTCACCAAGCCCCTCAGCTACCCAGTTAAGAGGACGACCAAGATGGCAGGCATGATGATTGCAGCAGCCTGGGTCCTTTCTTTTATTCTCTGGGCCCCAGCTATTCTGTTCTGGCAGTTCATTGTTGGTGGGCGAACTGTACCTGAGAGAGAGTGTTATATCCAGTTTTTTTCCAATGCAGCAGTCACCTTTGGCACAGCTATTGCTGCTTTCTACCTGCCAGTCATTATCATGATGGTCCTCTACTGGCAGATATCTATGGCCAGCAAAAGCCGTATCAAAAAGGATCACAGGAAGCCCTCTGGCAACCAAGAAGCTCTCTCCCCAAGTTTGGTACGGGGGCAAATTGTTaaacccaacaacaacaacttgtGTGCAGAGGAAGTAGACAGGGCACAGGTCCTGCACcagaatcaaaataaacatctgtcaGAACAGCATGACGGAAAGCTGCAGAATGGCAAGGCCCCTTCCACAAAatgtggagagggagaggaggcaggCCTGGAGAACTGTGGCCAAGTGGAGGAAAAAGAGAGCTCCAATGATTCAACTTCTGTAAGTGCCATGGCTTCCAACctgaaggaggaggagacagTGGTGCCCATAAAAGATAGTACTACCATTCCCAGCCAGGCCCACACACGCAATCGTACCAAGGCGGAAGGCTCCAAACTCACTTGCATCAAAATTGTGACGAAGTCTCCAAAAGGAGACAGCTATGCTACATCCAACACCACCGTAGAAATTGTCCCAGAAGTTGAGAAACAGAACCTAGTGGCTCGCAAGATCGTCAAGATGACTAAACAGcccccaaagaaaaaaaaggcccCACCATCACGGGAAAAGAAGGTGACTCGGACAATCCTTGCTATTCTCTTGGCTTTCATTGTGACCTGGACACCCTACAATGTCATGGTGCTTATCAATACCTTCTGCACCAGCTGTATTCCCACCCCTGTTTGGACTATTGGCTACTGGCTGTGCTATATCAACAGCACCATTAACCCTGCTTGCTATGCGCTCTGCAATGCCACTttcaaaaagacatttaaacatctTCTCCTCTGTCAATACAAGAACATTGGTGCAGCCagatga

Function

GO:

id name namespace
GO:0007213 G protein-coupled acetylcholine receptor signaling pathway biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0010459 negative regulation of heart rate biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0016907 G protein-coupled acetylcholine receptor activity molecular_function

KEGG:

id description
K04130 CHRM2; muscarinic acetylcholine receptor M2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU142255 lncRNA upstream 40913 27262231 ~ 27283320 (+) True G113594
TU142252 lncRNA upstream 63161 27260610 ~ 27261072 (+) True G113592
TU142245 lncRNA upstream 168371 27155535 ~ 27155862 (+) True G113585
TU142234 lncRNA upstream 261388 27062512 ~ 27062845 (+) True G113574
TU142232 lncRNA upstream 264639 27059370 ~ 27059594 (+) True G113572
TU142272 lncRNA downstream 55203 27380923 ~ 27401968 (+) True G113607
TU142367 lncRNA downstream 530394 27856114 ~ 27856462 (+) True G113680
TU142401 lncRNA downstream 733404 28059124 ~ 28060590 (+) True G113711
TU142407 lncRNA downstream 752233 28077953 ~ 28078459 (+) True G113717
TU142441 lncRNA downstream 812631 28138351 ~ 28138938 (+) True G113741
AMCG00006931 mRNA upstream 553381 26770526 ~ 26770852 (+) True AMCG00006931
AMCG00006930 mRNA upstream 618069 26704780 ~ 26706164 (+) True AMCG00006930
AMCG00006928 mRNA upstream 1063981 26234852 ~ 26260252 (+) True AMCG00006928
AMCG00006927 mRNA upstream 1120492 26196317 ~ 26203741 (+) True AMCG00006927
AMCG00006921 mRNA upstream 1352121 25949686 ~ 25972112 (+) True AMCG00006921
AMCG00006936 mRNA downstream 290415 27616135 ~ 27627333 (+) True AMCG00006936
AMCG00006937 mRNA downstream 485465 27811185 ~ 27831056 (+) True AMCG00006937
AMCG00006950 mRNA downstream 583486 27909206 ~ 27910398 (+) True AMCG00006950
AMCG00006942 mRNA downstream 588580 27914300 ~ 27935789 (+) True AMCG00006942
AMCG00006943 mRNA downstream 779888 28105608 ~ 28128135 (+) True AMCG00006943
TU142014 other upstream 1491291 25815055 ~ 25832942 (+) True G113400
TU141973 other upstream 1705788 25618067 ~ 25618445 (+) True G113369
TU141848 other upstream 2737114 24509003 ~ 24587119 (+) False AMCG00006893
TU141783 other upstream 2988317 24304779 ~ 24335916 (+) False AMCG00006884
TU141703 other upstream 3288121 24032113 ~ 24036112 (+) False AMCG00006878

Expression Profile