RNA id: AMCG00006936


Basic Information

Item Value
RNA id AMCG00006936
length 3233
RNA type mRNA
GC content 0.39
exon number 6
gene id AMCG00006936
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 27616135 ~ 27627333 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTTGCTTTTCTGACTGACGGTTTTTGGTACGCACCTGTACAGCGaagGGATGAGATGCATGTCCCTTGAACACCCCACTGAGGACCACTGAGATGGCTGATCTTCTGAACAATTTATGTGATGTTCCcctaaagaaaaggaaatgtggCTTTCAGACGAAGTTAGCCTCATCAGAGCAATACATGGCATCTTTGCTCAGTACAGCTGAACTGTCTCTTCAAATACCTCAGAATGCCAATACAAGCTTTCCCATTTGGGAATTGCTACGGGCAAGCAAGGTGGAAGTACTATGGAATGTTACACCATATAAAATTGATATCTGCATTGTTCCTTTACACTCCTACACAATGACTCTCCCCCAGCCCCAAGTTCTGTCTAAAGCTGACCAAGACTGCAGTGCTTACCTTGCAGAGGATGAGTTGGATACTGATCTAGCTTCAATCGTTTATCAGCCTGTCCCAAAGGCCATGTGGGTGGAACAGGCTTCTTTTTATACCAAGCCATATGACAATATTAAGATCTGTGACAAATTCCTTCTAGGAAACTGTAGATTTGGCTTTGAGTGCAACCAACATCACACACCTTATCCCTTCCACTGGCAGCTTCGCAGAGAGGACACATATCAGTGGGTCAGTGTCTCGTATTCTGCACAGATCAAGCTGGAGAAGCTGTACTGCAACAAGGAAAAAGAACAGGCTACTTTGAAAGAAATGAACCACACATTCACCCTTGATTTTGAGAGCATGACAGTACAAAATTCAGAAATTTATGATAAAGTTAGAAGACTTTCTAACACAACCAATCCAGAATGGAACCCGTATTTCCCTACAGTGTGGCAGATTTATTGGTGGAATGACTTTGACTgggagaaatacaaaaaaTCTATTTCAGAGATTCTGGAGTCTAAAATGGAAGCTGGAAAAAACAAGTGTACTTTCACCATTGGGGTACAGGAGTATGAGCTGGACTTTAGCAGCTTAACCCAGAAGAACCTCAGAACAGGCTTTGAGCGCAGAATTCGCCGACGACCCACCTTCCAATTCAGCAGCTGGTATCCCCCAGTGTGGACAATGATGCCTGCACAAGAAGAATTCACAAGAGTGGAAGTGAAACCCTGTGAAGAAGCCTACCAGAAGATCTATGGGCTTTTCCACAAAACTATGTCTGAGACAATGGTAGAGATTGTCAGTATCCAGCAAATCCAGAACATCTTCCAGTGGGACAAATATAGAAGACAAAAGGATTATATGTTGTTCAAGCATTCCGACAGCTTGAACATTGAGCGCCATTTATTCCATGGAACCACAGAAGCCGCAGTGGATGTAATTTGCAAGATGAACTTTGACCCCCGTGTGGCAGGGAAGAATGGGATTTCTTATGGTCGAGGAAGCTACTTTGCAAGGGATGCCAGCTACTCCAATGGTTTTGCACCTGCTGCTCCCAACGGATATCAGTACATGTTCCTCGCTAAAGTGCTTGTAGGCAAAACAAACTTGGGAAAGCGGAAATACTACAGACCTCCTCCTGTTTGTCCAAAAAAAGCTGGAAGCGATTTATATGATGCCTGTGTTAATCAGCGGTTAGATCCATCAATTTTTGTTGTGTTCGATAGCTGTCAGTGCTACCCTTACTACATGATTAAGTACAGGGCTTTGTCTGATGTTGTCAATGTCTTTGAATAACATCAATATGCTGTGTATTCTGGTTCACAGTAGCAGAAGAAGCCTGACAGCGTGATATAGGATGGATCTCTCATTAAGTCATGGACTACCCAGCATATGCTAGGGAGTGCAGAAGTTGAATGATTATGGCTATGATAATCTGGGACATATATTCAGAATGACCTgacaacatttgtttattattaatttattatatataaggctagtatgtttaattttataaccTGTATTCCTCTGGAcaaatgggttttgttttcagaaactcATCTACTGTGTTAAGTGATACCTCCCCACACCGAAAAAATCTACACTGCATCTTATAGACTTTTAAATGCTCAATATAGGAACTAAAACCATAGTACTGCAGGTCACCTATTTCTTCTCACTGAGCCTGTTGCTCATACAAATTAGTCTTCACATTTTCAGATAATGTTGCTCTTGTCTACATTATTATAACTGACACCATACACCGCCTTGACTAGCACTTTGAATATTAGCATGTTTGGCTTTATAGCTCGAACCTGATGCGTCTATGATATTGAAAGTCACCTTCACAGAGATTACatatcactttgtttttgtctgttgaaCCATACTCATTAATCCACCTTTCTTCTCCATTAAACTACGGGTGCAAAGAATGCTCAAAATAGAGAATTGCgattaattgtgttaaaaaatatgaatgtgttattcagtttaaattaattgtttttatttaagaggTTTTCAGTGCTATTGTGTTCTGTAAGTGCCTATTAGCTAGCTGTAGGATGATTCATGCAGTCTCTGCTTTGGTGGCGGAAGTATATGGATAGTGATACAAGAACTATATCCTCATGCATAGCTGAATAAAATAATGGGGAGTTACCTGTGTGTCTAGTGGCTGTGTCACCACTTCCAGCAGCAACTTGATTTTGCTTTGACCCTGTACTGACCAGGCATTAGTCTTAGTGTTTGAGATCTGATTAAATCAGGCTTTTAGGTGGTGTAACAGTAATGTAAAAGTTACCATCCTGTTACTGGCAGATCATCAACTGCACTCAAACTAAATACTTTCTAATTGTCTCTTATAAGTATGTTATCTGTTCTGTTATGTTTTTTGGAAGAAAGGAATATCACATCATAggcactgtttttattttattttatgttctctATTCCTGCACTTTGATTTTGCTGCACTGTATAATTTCTGTCCTAGGACCCTGTGTTTTATGTGACAAAATGTATTAGGCTtcacttcattcctcccagcACAGTGCAGTCATGTAGAATTAAACCACTCATTGATTAATCGCCCATAGTATCATCAATTAGTCATTACATTAAtgaactttaattaattaatgaacacaacaaaaaaagtgtgaCAATCCCCCCCAGGAGAATtcctgagaaaaaataaaaataaaaggaacacATCATTTCTCATCAAAAGTCTAACATAAAACTGCACAGATTCCTTCAGtgctatattataatacatatgtattgcAAAGATAACAATTTTAAGTTGTTCACAAGCAGCACGTTAAATTTCACTTACAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU142272 lncRNA upstream 214167 27380923 ~ 27401968 (+) True G113607
TU142258 lncRNA upstream 253091 27268971 ~ 27363044 (+) True G113596
TU142255 lncRNA upstream 332815 27262231 ~ 27283320 (+) True G113594
TU142252 lncRNA upstream 355063 27260610 ~ 27261072 (+) True G113592
TU142245 lncRNA upstream 460273 27155535 ~ 27155862 (+) True G113585
TU142367 lncRNA downstream 228781 27856114 ~ 27856462 (+) True G113680
TU142401 lncRNA downstream 431791 28059124 ~ 28060590 (+) True G113711
TU142407 lncRNA downstream 450620 28077953 ~ 28078459 (+) True G113717
TU142441 lncRNA downstream 511018 28138351 ~ 28138938 (+) True G113741
TU142443 lncRNA downstream 513950 28141283 ~ 28142251 (+) True G113743
AMCG00006933 mRNA upstream 290415 27324233 ~ 27325720 (+) True AMCG00006933
AMCG00006931 mRNA upstream 845283 26770526 ~ 26770852 (+) True AMCG00006931
AMCG00006930 mRNA upstream 909971 26704780 ~ 26706164 (+) True AMCG00006930
AMCG00006928 mRNA upstream 1355883 26234852 ~ 26260252 (+) True AMCG00006928
AMCG00006927 mRNA upstream 1412394 26196317 ~ 26203741 (+) True AMCG00006927
AMCG00006937 mRNA downstream 183852 27811185 ~ 27831056 (+) True AMCG00006937
AMCG00006950 mRNA downstream 281873 27909206 ~ 27910398 (+) True AMCG00006950
AMCG00006942 mRNA downstream 286967 27914300 ~ 27935789 (+) True AMCG00006942
AMCG00006943 mRNA downstream 478275 28105608 ~ 28128135 (+) True AMCG00006943
AMCG00006944 mRNA downstream 520505 28147838 ~ 28188827 (+) True AMCG00006944
TU142014 other upstream 1783193 25815055 ~ 25832942 (+) True G113400
TU141973 other upstream 1997690 25618067 ~ 25618445 (+) True G113369
TU141848 other upstream 3029016 24509003 ~ 24587119 (+) False AMCG00006893
TU141783 other upstream 3280219 24304779 ~ 24335916 (+) False AMCG00006884
TU141703 other upstream 3580023 24032113 ~ 24036112 (+) False AMCG00006878

Expression Profile