RNA id: AMCG00006938


Basic Information

Item Value
RNA id AMCG00006938
length 2347
RNA type mRNA
GC content 0.43
exon number 5
gene id AMCG00006938
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 27805483 ~ 27824074 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACATCCCCAGACTACCACAACATTAACATGAAAACTAATGCTTGGAGGAACATTTTGTTCACCATGGATCTACCAGATAGTGGGAGCTGTGTAGCTGCGGGGAGAATGATGGGTGGGTTGAGGGGCAGCTGGAAGGGGACCAGACTTGCTGCTGCCTGCAAAGATACTGGTAAACTCTGCACGGACCACATTGGCTTCAAAGTGTCCAGACAGAGGCAGGGGGTCTACACAAATTCCACTCCCATCTCTGTCAGGAAGGAATACATTGCTGTGTTTTGGGGAAGCAGGGCCCTCATCCACCCCCCCTCCACTGCTCAGCAAGATGAACTTATTGGGTCCTTGTGGACCACACCCCTTCCCTTTGGCAGTCAAAGCTTCAATGACACTCTGAAGGTCTGCAGTCTTAGGGATGACCACCACTTGAGTGTTGGGCATGGAGGGGTGATCCAGGATCCGGATTCCATCTGGGATCTGCTGGGAACTGGAGGCCGGTCATGCGGACTACTGATGCCCCGCAAAAGGAAGAACAGCAACACCTCAAAGAAGCCCCAGCTGCTATTCCAGGAAAATCCGATAAATGGCATCAAACACCACTATGGAACTCCCGTCAAGTCTGCACTGAATCCTAAACATGTTCCGACTGAAGCACCAGGAGGGAACGCAACCTGCCAGTGGGTGACTCCTCAGTTTGACGCAGCCATGCAGTTGCATCTCCCCACCCGAAGGAGAAAGAGACAGCAGTCAGGCAGTTCTGTGCAGCAGAGTGTGCTGGGCAGGAGCTCTCTGTTGATGGCCAAGAAAACCAGTGTTTGCAAGTTCCCGTCCTTGACTTTCAGGAACACTGTTATGTTGCACCACAAGGCTGCTCAACAGTCACTTGCAGTCCcactaaataaaatcaaatgccaGACTGGGAGGCTTTCAGACAACAAGGAGGTTACGGCAGCCAGACCTTGTAAGGAAGCTCACTCAAGTTTAAGTCTGCTTTCAACCACTGAGACCTGTGAGAGCCAGAGAACCCCATTGCCTGAAATGGAAATAGACAGACATGATGTAGCACAGTCTGTGAGAGGCTACAGATCCCCTGATATAGAAAATATCTTCACTCCCCCTGCCTATCACACTCCAGAAGCAGGTGATTGTGGAGTTGGCAATGTTGAATCTGATCTACTAGGTAGGCTCATCTTCTCCCCAACACCAAATGACAGTGAACCCCAAGGGGACACTCTGGTGAAGGACACCCCGGAGCAGGATTATGGGGTAAAGGTaacctggaggaggaggaagggcaTCATGAAATACCTAAAAGACCATGGTCAACTGAGCAGCGGGGAGGCTCTAGTGAGGAGCTAGCTGGAGCTCAGGGGGATAAAGTACTCCAGTTGGTAGGGGTTGCCACCTGACTATATAACCCTTGTATAAAAAGCACAggtttttaaacagtttttgaaaCAGATAAATGTGTAAACTGAGCATTAAGCCTTTGCTACACTTACATTTAATGCTATTGATGCCTATTAATATTCAAtagtgtttaataaaataatgttatcataatacaattaatcaagaaaaccctttttctttcttaatttgcAGTTAGAAACTTTAACATTGGTGTCCATGTTCTGTTTATTAATAGGTCTGTATCATCCTTATTTATACAGACTCAGCCATCAACCTTTACTGACTCACTGTGTGTATGGTCTGATTAGCaaagaattgaaaaataattcagtCAGACGTCAATAATCTCTGGGTAAAATCAAACTATACGTTTAGCAAAGGTTTAATTCTTAACTTATGTGTTAATGTCTTTCACTTGGGGagaactaaaaatataaaactattttatatattttttggagaACAGGTGAAATTAGGTGAATACTTTGATTGGTATAAGTAAATCAAACAATGGGTTTTAGTTCTGCTGTAAAtacttaaatgtttaataaggATGATGCTGATTAGACAAATGTAAGTGacacttacatttaaacaataataaaatattaaacaataaagtGCTAAAAAGCACAGAACTTCAGATTTTCACCCTTATCTTTCCAATGTTTTACAGTACTCCATAGCCATATGAAATTAAGTGTATCTCTGGAAGTGAAAGACCTGAGGAATTGCAGTGATTGACATGTTAAATATActttaagtttaaattaattgtcaGTGGGGTATTAAGAACACATCATACAACATAGTGATTGAATGCTCTGCAGTGTATTGAAAAATACAGCAGATATGATCATGTTGTAGACCTCCCCAAACcaatttgtactgtatttgtaagagggttgaaataaaataaaatgtatttccaaatgAC

Function

GO:

id name namespace
GO:0008094 DNA-dependent ATPase activity molecular_function

KEGG:

id description
ko03040 Spliceosome
ko03440 Homologous recombination
ko03460 Fanconi anemia pathway
ko04110 Cell cycle

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU142359 lncRNA downstream 330 27802490 ~ 27805153 (-) True G113673
TU142352 lncRNA downstream 5189 27799938 ~ 27800294 (-) True G113667
TU142308 lncRNA downstream 442453 27270459 ~ 27363030 (-) True G113631
TU142247 lncRNA downstream 640085 27165179 ~ 27165398 (-) True G113587
TU142246 lncRNA downstream 649626 27155535 ~ 27155857 (-) True G113586
TU142368 lncRNA upstream 32037 27856111 ~ 27856461 (-) True G113681
TU142417 lncRNA upstream 234287 28058361 ~ 28058567 (-) True G113722
TU142418 lncRNA upstream 234645 28058719 ~ 28058931 (-) True G113723
TU142419 lncRNA upstream 235054 28059128 ~ 28076291 (-) False G113724
TU142420 lncRNA upstream 235054 28059128 ~ 28060592 (-) True G113724
AMCG00006934 mRNA downstream 128283 27668786 ~ 27677200 (-) True AMCG00006934
AMCG00006935 mRNA downstream 155564 27637220 ~ 27649919 (-) True AMCG00006935
AMCG00006932 mRNA downstream 496313 27308892 ~ 27309170 (-) True AMCG00006932
AMCG00006929 mRNA downstream 1165535 26608543 ~ 26639948 (-) True AMCG00006929
AMCG00006926 mRNA downstream 1444032 26192389 ~ 26361451 (-) True AMCG00006926
AMCG00006939 mRNA upstream 140893 27964967 ~ 27970379 (-) True AMCG00006939
AMCG00006941 mRNA upstream 178428 28002502 ~ 28015328 (-) True AMCG00006941
AMCG00006940 mRNA upstream 192589 28016663 ~ 28047076 (-) True AMCG00006940
AMCG00006948 mRNA upstream 317183 28141257 ~ 28144216 (-) True AMCG00006948
AMCG00006949 mRNA upstream 393539 28217613 ~ 28223587 (-) True AMCG00006949
TU142323 other downstream 278135 27402600 ~ 27527348 (-) True G113645
TU142176 other downstream 1304802 26500015 ~ 26500681 (-) True G113530
TU141596 other downstream 4398276 23404175 ~ 23407207 (-) True G113050
TU140946 other downstream 6855647 20854057 ~ 20949836 (-) False AMCG00006813
TU140776 other downstream 7569277 20235856 ~ 20236206 (-) True G112420
TU142485 other upstream 443188 28267262 ~ 28292598 (-) False G113775
TU142484 other upstream 467381 28291455 ~ 28292598 (-) True G113775
TU142549 other upstream 887145 28711219 ~ 28812548 (-) True G113833

Expression Profile