RNA id: AMCG00006942


Basic Information

Item Value
RNA id AMCG00006942
length 2155
RNA type mRNA
GC content 0.41
exon number 6
gene id AMCG00006942
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 27914300 ~ 27935789 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAAGCAACCCCACAGCATAGTACAGCGGCGCCTCCTAGAGGGCAACATTACGAGGTTGAGGGGGGAAAGCAAAGACTTAGCTGCCAGGGTACGTTCACCTTTggcagaggagaaggaggagcagaAGGTGGAGAGAAAAGCAGCAGAGGAAAGAGGAACTCCAGAGGAGAGCGAGTCCTCAGATGAGAGTGAAGCAGCAAAGGGGAGCTGTGTTCCAGatgagtgggagagagaggtgcCAGAGACAACaaaggagaaagaaataaaagaggagaaaaaggtGACAGAGGAAGAAGTGACTGACAGCGACAGGAAGATGAGAAGACATGTGACAGAGGGGAACACCAAATCTATGGAGGTGCTTAGCATTCATTGCCAGtGCTGTGACAAGGAAGTGAAGGCAAAGATCAACACAGGCCACCGGCATAACTTCATATCACAGAACTTTTGCAGGAAGCTAGGaTTGAGAACCATCCAGGAGATTATGAGCCCTGAACAAACAGTGGGACACAATGTACCTCTTGGTGTCACTGGAACTGTGGAGAATCTGGAACTTCAACTGGGCAAGGAGAAGTTGGAGTGCTCTGCACATGTAGTTGaagatGAGACTTTTGAGCTGTGCCTGGGATTGCAGACTCTGCTAAAgctcaaaTGCTGTCTGGACCTGCATGCAGGTGTACTGAAGCTGAGAGGGACTGAGGAAGAAATCCCTTTCATGGAGAGCCCAGAAAAAGACCACACTGACACCATCTGACCCTGGAAAGCCATTTGCCTCATCTACTCTGAAGTCAACCgtagcaacaaaacaaaagggccttaatttcaaaagcaaagtttcagTCCCTCTTGATCGAGACCACTGGGCTGAATATGTCTTTGTGTCTCCTGAATGTTTTGTGTGGCCAGCTACAATGTTAGTCTTTTTACCTTTTTCCATGCAAGGGTGAGGGCCTCAGTTGAGCTGGCAGAGATGTCTGTCATGAAATCCTCTGATTCAACAGCACCCCCCAATAAAAACCTCTGTAATGGGCAcagaggaacaaaacaaaaacaaaaacaaacatgcaatgtTAAACTCATGTCTTCTTCTCCCTTCCACCTTTCTgtctgaaaaaaacattttttgaaagtTAGTTGCATTAAAACTCCCTCCTTCCAGTATCACCTAGACTTGGAGTGGAACCCATTATTAATACCAGGGAATCCCAAAACACTTGTTTTCTGATATATTGGAATGCATAAATGGTCtagtaaagaaacaaattagagCTAGTGTTTACCCAGAGCTAGATATActattcatttttaacattccAACGCCCATATAGAtaattgagaaaaaaacaaaggccAGTTACATTTTTTGGATTATCTTTTAGCAACTTTCTTTTATATGGGCATGTGCATGCCTGGGTGTTCATATAATTGTGCACATAAGggttttattattcatgtttcaCACGGGAAAAAAGGGATATTGCTGTACTTAGCCTGGCATCCTGGCATCCCTAAATACCAAAAAGGGGCAGCCAAGTAATGACCCCATCTGCTTTCCTCATTCTCCTTCTGAGGTTATTAATCAAACTGTACCAGAAGCTCCTTTTTTTGGTGCCACAGTTTTGGCAAGAAGCTGCGCTGGGAAATGTTGTCTTTTGTATTTGTGCCTGCTTTAATTCTTTACTCTTGTTTCatgaaataatttacattttagtttaatctACTACCACAGAGCACCTGTGCAAAGTCAATATATGTGTCTGTGACTAGTGCTAGTAAGTATCTTTTGACAAGTATTTGCATTTGGTTTGGACAGAGAGCAGTTTTACTTTATGtagatattatattttacagtttatttttcttgttttcaagaaccctactgctttaaaaaaaagcagttcTGGTCAGTGTTAGGTTCAGTTCAGTTgctgtatttactgttttaatttacCATGCTTGTTCTCCAATCAAGGACTTGAAAGACTGAGTCTCTGTGCACTTGCATCCTTTGATATATTATATACCTGAGATCTTGTACTCTCCCTCAATTTCTTCAAATTAACTGTTCACCACAAACAAAtctagatgtttattttttgtgcttactgatcaatattttctctgcCTAATAAAATATGTCTTATGGCTagaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU142367 lncRNA upstream 57838 27856114 ~ 27856462 (+) True G113680
TU142272 lncRNA upstream 512332 27380923 ~ 27401968 (+) True G113607
TU142258 lncRNA upstream 551256 27268971 ~ 27363044 (+) True G113596
TU142255 lncRNA upstream 630980 27262231 ~ 27283320 (+) True G113594
TU142252 lncRNA upstream 653228 27260610 ~ 27261072 (+) True G113592
TU142401 lncRNA downstream 123335 28059124 ~ 28060590 (+) True G113711
TU142407 lncRNA downstream 142164 28077953 ~ 28078459 (+) True G113717
TU142441 lncRNA downstream 202562 28138351 ~ 28138938 (+) True G113741
TU142443 lncRNA downstream 205494 28141283 ~ 28142251 (+) True G113743
TU142447 lncRNA downstream 264753 28200542 ~ 28204108 (+) True G113747
AMCG00006950 mRNA upstream 3902 27909206 ~ 27910398 (+) True AMCG00006950
AMCG00006937 mRNA upstream 83244 27811185 ~ 27831056 (+) True AMCG00006937
AMCG00006936 mRNA upstream 286967 27616135 ~ 27627333 (+) True AMCG00006936
AMCG00006933 mRNA upstream 588580 27324233 ~ 27325720 (+) True AMCG00006933
AMCG00006931 mRNA upstream 1143448 26770526 ~ 26770852 (+) True AMCG00006931
AMCG00006943 mRNA downstream 169819 28105608 ~ 28128135 (+) True AMCG00006943
AMCG00006944 mRNA downstream 212049 28147838 ~ 28188827 (+) True AMCG00006944
AMCG00006947 mRNA downstream 357231 28293020 ~ 28331354 (+) True AMCG00006947
AMCG00006945 mRNA downstream 396679 28332468 ~ 28364610 (+) True AMCG00006945
AMCG00006946 mRNA downstream 432335 28368124 ~ 28401071 (+) True AMCG00006946
TU142014 other upstream 2081358 25815055 ~ 25832942 (+) True G113400
TU141973 other upstream 2295855 25618067 ~ 25618445 (+) True G113369
TU141848 other upstream 3327181 24509003 ~ 24587119 (+) False AMCG00006893
TU141783 other upstream 3578384 24304779 ~ 24335916 (+) False AMCG00006884
TU141703 other upstream 3878188 24032113 ~ 24036112 (+) False AMCG00006878

Expression Profile