RNA id: AMCG00006943


Basic Information

Item Value
RNA id AMCG00006943
length 1399
RNA type mRNA
GC content 0.46
exon number 10
gene id AMCG00006943
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 28105608 ~ 28128135 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATCAGGAGCCCTTTGCTATGCTGAATTGGGTACAACTTTCAAGAAATCTGGGGGGCATTACATTTACCTTATGGAGACGTTAGGCCCCTTGCCAGGGTTCCTGCGACTATGGGTAGAGTTCATAATGATCAGACCCGCTGTGGCATCTGTAGTTGCTTTGGCGTTTGGGTGCTATGTTGTGGAGCCTCTGTTTGCCCCCTGCCCTGCACCCATGGCTCTCACCAGACTGGTCAGCCTTCTTGGAGTGACATTTGTGGTGGCTATAAACTGTTGGAGTGTGAGCTGGGCATCACGCATACAGATCACCCTAACTTTTTTGAAGATGGCAACCTTGCTCTTGATTATCATCCCTGGTATAACTGTCCTTGCCAAAGGAAACAAAGAGAACTTCCAGGATGCCTTTGACACCAGCTCCTTAAACCTTGAAAAAGTGCCACTGGCTTTCTTTTCAGGACTAAACATTCCGCTGTCAATTATCTTCTCCATGGTGATAGTGACTGTGTCTTTCGTGCTGACCAATGTTGCCTACTATGCAGTGATGACGGCAGAGGAAACTTTTGCAGAAAGGACCATCCATGGCTTCTCCTCTGTGATTCCAGTCCTGGTTGCACTGTCCTGTTTGGGGGCTCTAAATGGAGGTTTCTTCGTTGCGCCCAGGATGCTGTTTGTAGGGGCACGGGAGGGGCAGTGGCCAGTGCTCTTCTCCATGATTCACATCCGCCGACAGACCCCCCTGCCTGCGTACCCTTTTGTGTTCATCATGCTTCTGCGAGGGGAGCTCTTCCAGCTCCTCAACTTCTACAGTTTTGCCCGGTGGTTTTTCATCGCTTTAACCACCCTCGGGCTTCTGGTCCACCGCTATAGATTTCCAGACTACCCTCGACCTTTTAAGGTACCCGTGATTATTGTGGTGGCCTTCACAACAGTATGCTTTGCCATTGTTGGTCTCTCCATCTATTCAGACCCCTGGAACACTGGGGTCAGCTGTGCCATCACCCTCTCTGGGGTGCCAGTCTACTACCTAACTGTTCATGAGCAGAGATTACCCAAGAGATGGAGGAAGGCCTTCAaatactTCACCATCAAGCTGCAGATACTGTTGGAAGTTGGGCAGCAGGAAGTAAAGACATTTTGAAGCGACTGAATTATTAATCAACACCTTTCCTTCTGGTCATCTTTTATGTGTGACATTCCAATGATATTTGATTTGAtgagaaaatgttaatatatgcTGAGGCTCAATGACTGTTTTGTGGGTCTTATCAGCAGATGTGGGATTTACATGGATAGTTTCTAgtgaaaattattaaaaggaTTAATTTGTTgaacttttaattgtattaattattgaagATCATTTTGATGTTGAtgtgatattaaatatatacctGGGCTCTAA

Function

GO: NA

KEGG:

id description
K13869 SLC7A11; solute carrier family 7 (L-type amino acid transporter), member 11

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU142407 lncRNA upstream 27149 28077953 ~ 28078459 (+) True G113717
TU142401 lncRNA upstream 45018 28059124 ~ 28060590 (+) True G113711
TU142367 lncRNA upstream 249146 27856114 ~ 27856462 (+) True G113680
TU142272 lncRNA upstream 703640 27380923 ~ 27401968 (+) True G113607
TU142258 lncRNA upstream 742564 27268971 ~ 27363044 (+) True G113596
TU142441 lncRNA downstream 10216 28138351 ~ 28138938 (+) True G113741
TU142443 lncRNA downstream 13148 28141283 ~ 28142251 (+) True G113743
TU142447 lncRNA downstream 72407 28200542 ~ 28204108 (+) True G113747
TU142465 lncRNA downstream 87865 28216000 ~ 28216235 (+) True G113760
TU142521 lncRNA downstream 490871 28619006 ~ 28619812 (+) True G113805
AMCG00006942 mRNA upstream 169819 27914300 ~ 27935789 (+) True AMCG00006942
AMCG00006950 mRNA upstream 195210 27909206 ~ 27910398 (+) True AMCG00006950
AMCG00006937 mRNA upstream 274552 27811185 ~ 27831056 (+) True AMCG00006937
AMCG00006936 mRNA upstream 478275 27616135 ~ 27627333 (+) True AMCG00006936
AMCG00006933 mRNA upstream 779888 27324233 ~ 27325720 (+) True AMCG00006933
AMCG00006944 mRNA downstream 19703 28147838 ~ 28188827 (+) True AMCG00006944
AMCG00006947 mRNA downstream 164885 28293020 ~ 28331354 (+) True AMCG00006947
AMCG00006945 mRNA downstream 204333 28332468 ~ 28364610 (+) True AMCG00006945
AMCG00006946 mRNA downstream 239989 28368124 ~ 28401071 (+) True AMCG00006946
AMCG00006951 mRNA downstream 365300 28493435 ~ 28494011 (+) True AMCG00006951
TU142014 other upstream 2272666 25815055 ~ 25832942 (+) True G113400
TU141973 other upstream 2487163 25618067 ~ 25618445 (+) True G113369
TU141848 other upstream 3518489 24509003 ~ 24587119 (+) False AMCG00006893
TU141783 other upstream 3769692 24304779 ~ 24335916 (+) False AMCG00006884
TU141703 other upstream 4069496 24032113 ~ 24036112 (+) False AMCG00006878

Expression Profile