RNA id: AMCG00006945


Basic Information

Item Value
RNA id AMCG00006945
length 4212
RNA type mRNA
GC content 0.47
exon number 22
gene id AMCG00006945
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 28332468 ~ 28364610 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTGTGGCCTGTGTGGAAATTACAATGGAAACCAGGGAGATGACTTCATGACAGCTGCAGGATTGGTGGAGGCTCAAGTGGAGAGTTTTGGGAACTCTTGGAAGATGAATGGGGACTGTGAAAATGTGGTCAGACAGGACACAGATCCCTGTATACTCAACCCTAAAAGAGTGCGATATGCGGAGGAGGCCTGCTCTGTGCTCATGTCAGCGGAATTCCAGCCTTGCCACTATGAAGTAAATCCCGCACCATTCCTGAAAAACTGCCGATATGATGTGTGCTCATGCTCTGATGGACAAGAGTGCTTGTGTTCAGCTGTATCTAACTATGCCACGTCCTGCGCCCGGAAAGGAATGAGCTGCCCAGAGGACCAGATGTATGAGCAGTGTGGGAGCCCCTGTAACCAGACTTGCCACTCACTCTCATTCCCGGAAACTGACTGCCAGGAACTCTGCATGGAAGGCTGCTACTGCCCCTGGGGCCTCTACAGCAATGATAATGGGGAGTGTGTGCACAAATCCCAGTGCTCCTGCCACTATGATGGAGAGATTTACCAGCCTGATGATTTCTTCTCTGACCATTCCACCAACTGgaTGACAAATAAGTTTGATGGATCGATGCACTGCAGCTCCAATGAAATCCCAGGAACAATGCCCTCCAACTTTTACTTCAGTGACCTCTCACACTCCAGAGTAAAAAGATCACTGATGTGCAAGCCACCCACGAGGAGCTTTGTGTGTACCAGCCCCAGAGACCAAGGGATAGAGTGTACAAAGACCTGTCAGAACTATGACCTGGAGTGTGTGAGCCAAGGCTGCATCTCAGGCTGCATGTGTCCTGCTGGGAAGGTACGGCACAAGAGTACTTGTGTGTCTCCAGAGCTCTGTCCATGTTTTCACAATGGCAAGGCATATCCTCCTCAGGAATCAATCAACATGGACTGCAATACATGGAAGTGGGAATGCACTGAGAAAGTGTGTGACGGTTCTTGCAAAACTGTTGGGGAGGCTCATTACCTGACCTTTGATGGGTTGAAATACACCTTCCCAGGACTCTGTCAGTATGTACTAGTGCAgGATTTCTGCAATGGCAATGAGGGCAGCTTTCGCATTCTGGTTGAAAACAGTGTTTGTGGAGTCCCAGGGCACAAATGCATGAAGATCATCACTGTGCTTTATGAAGGAGGAGTCATTGAGATGATGCATGGAAAGGAGAAAGTGTGTGGACTCTGTGGCAATTTTGAtggaaatcaaaacaatgacTTGCTGAGTAGCAACAACCAGTTAGAAGTGGAGCCTGCAGATTTTGGAAATTCATGGAAAGTCAATCCAGGATGTGCTGATGCTTTTCAGGTGGCCTCCCAATGCAACGATAATATAATGAAGCTTGTTTCAGTGGAGCAGTCTTGCCTGGTTCTCACCAGTGAAATATTTAGGGAATGCAATAGTGTGGTAAACCCTGAACCCTACTTGGAAATCTGTACCTATGACACTTGCTCCTGCCAATCCATTGGAGACTGTGTTTGCTTCTGCAATGCCATAGCAGCCTATGCCCATGAGTGTGCCCAGAGAGGAATTGTTATCCACTGGAGATCCAACAGCTTGTGTCctttgaGTTGTCAGGATCTGAATGAAGCAGAGCCTGAGTTTGAGTGTGAATGGAGGTACAACACCTGTGCTCCTGCATGCCCCATAACTTGCCAGCATCCTGAGCCCCTAGAGTGCCCTCAGCAGTGTGTTGAGGGGTGCCATGCAAGCTGCCCACCAGGAAAGCTTCTTGATGAAATGGCTATGAAGTGCATCAACCCATCCCAGTGTCATGTCTGCATTCATGAGGGCAGGAAAGTACCTCATGGCAAGAAGATAATTTTGAACCATGAGATCCCAGCGCTtacacAAAATGCCAAGAGAATTTCAACAGGAATTAATGACCAGTACAGTATGAATGCTCTCTTCACATGTTTAGCTAAGGTTgtgattCACTGTGAGAACAGCAACCTTACCTGTGAGGATTGCCCGATAGAGATAGTAACCACCATGCCCCCTTATATCCTAACGACCGGTGCTCCAGAGCCCTTTTCCACGGCTATGCCTGAAGACCTCTGTGACCGGGCCATGGACCTGGCTTTCCTAGTGGATGGGTCCTCCTCTCTGTCAGAAGAAGACTTTGAGTCTGTGAAGCATTTCATCATAACCGTGGTTGACAGGTTTCGCATGGGCTCTGCACACACCAGAGCCACCATCCTGCAGTTCCACACTGGTGTCAAGAGTTTTGGGATGCAGGTGCAGAAATGGGTCTTCAAGAAAATGGTGCGGGACATGAAGTACAGTGGTGGGGACACGGCCTTCATGGATGAGGCtctgaaatatctggctgtgtTCATCTATGACAAGGACAAACGTGAGCATGCTGGCAGAGTGGCTGTGCTGCTGACAGCCAGTACCAACCCACGCCCCATGAAGACCACCCAGAGGTTGCTGAAGAAGAAAGGCATAACAACGATCACCATTGGTTTGGGCCCAGATGTCAGCATGGCCCAGATTAATGATATCACCAGAGCTTCCCCGAGCAGCAGGGCTTATGTTCTCAGCAGTGTGGGGGAACTCAACGAGCGCACTATTGACATCACTGATTACTTGTGCACTTTGGGACTTACTCCACAAGTGCCCACTAAAAACAAACCtattctaaaacaaacaaccaccATTTCGACATCCACCACCATGGTTCCTTCCTTTACCACACAGTGGGGTGTCACAACAGAAATGTTACCTGTTCACACGACGGTGCCCACCACAATTGCCAGCTCCTTCGCTGTCAAAGACATCACATTTGTGATTGAAGGATCTTCTAAAGTAGGTGAAAAGAACTTCAATGAAACTAAGGAGTTCCTAGCCAGTGTCATCTCACAGTTGCCTGTTGGGGAAGAGGAAATACGCATTTCTATTGTCCAGTATTCTGTAACTGCCACAATTGAATATTCCTACagggaaatacagaaaaagagTGTTATACTGGAACGTCTAAGGAGTATGCACTGGCATGCAGGAGATGCCACAAACACAGGGAAGGCTGTAAAGATGGTATCAGAAAGCACCTTCACAAACTCCCAGGAAAGCAGGCAGCAAGTACCTCAGCTGGTTTTCCTTATAACTGAAAATCCCCCCACTGACAATATCACAAGACCCCCGAAGACTAACACTGTTGAATTCTATCCCATTGGAGTTGGACCCACAATCAGAGAACCAGACCTTGAACTGCTTAGTTACCCTCAAAAGCCCCTTATTGTTGCAAATTACAGCCTACTTGGTAATATTGTGAAGCAAGTGATCCAAAAAGCTGTATTACCCCCAGCTGCTTCTGTGGCAACTACTTCTGCCCCGTTGGTAACACTACCCCCTTCAGTTGCCTGTGACAAAGAAATGGATGTGATTTTCCTTCTAAAAGAAAGCTCAGAAATGCATGTCCCATTGTTTGAAGACATGAAAAGATTTGTGAAAGCATTTATCAACAAAGCTAATATTgGTGCAACAGGAATACAAGTTTCAGTTCTACAGCAtggagacacaaacacaatagaTGTTTCTTGGAGGGAtcttcaaacaaaaacaaatctcatcCATTTGGTTGACAGAATGCAGAAGAAGAAGGCTGCTCCCACCAGACTGGGTTCCGCACTACGCTTTGCAGTCCGAAGTGCCATATCTTCAACTGATGGAGGTCGTCCTGGGGTAGCAAAGATTGCTGTTATGATTGTGACTGACAGGTCTCAAGATGATGTGGAAGGAGCAGCACATGAAGCTCTCACAGCTGGTATTTCTGTGTTTCCTATTGCCATTGGAACATACTACAGCAAGAGCCAGCTGAGTACACTGGTGGGGCTAAAGGAGCTAAATAACATTATTCTCCTAAAGCAAATGGAAGACCTTCTGGCTATGATGACTCTTGACAACATGTTCATTGACAAGCTTTGTCGAGCTGGCCCACCTGGTGGATGTATGGATGATGatggaaatgaaagaaagCCTGGAGAAACCTGGGTCCTCTCTGACAGATGCCATAGATTGCTGTGTCACCCTAATGGTGCAGTAAGCATAGAGACTCACAGAATCAACTGTCAGAAAATGGAGAAGCCTGTGTGCAAGAACAACCTGGCCAGTGTCAAAATTGAGGAGCCTTGTGGCTGCCGCTGGGCCTGTCCTTGTGAGTGA

Function

GO:

id name namespace
GO:0007599 hemostasis biological_process

KEGG:

id description
K03900 VWF; von Willebrand factor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU142465 lncRNA upstream 116233 28216000 ~ 28216235 (+) True G113760
TU142447 lncRNA upstream 128360 28200542 ~ 28204108 (+) True G113747
TU142443 lncRNA upstream 190217 28141283 ~ 28142251 (+) True G113743
TU142441 lncRNA upstream 193530 28138351 ~ 28138938 (+) True G113741
TU142407 lncRNA upstream 254009 28077953 ~ 28078459 (+) True G113717
TU142521 lncRNA downstream 254396 28619006 ~ 28619812 (+) True G113805
TU142540 lncRNA downstream 282655 28647265 ~ 28647523 (+) True G113824
TU142552 lncRNA downstream 465049 28829659 ~ 28830065 (+) True G113836
TU142564 lncRNA downstream 504116 28868726 ~ 28868988 (+) True G113846
TU142565 lncRNA downstream 504449 28869059 ~ 28869326 (+) True G113847
AMCG00006947 mRNA upstream 1114 28293020 ~ 28331354 (+) True AMCG00006947
AMCG00006944 mRNA upstream 143641 28147838 ~ 28188827 (+) True AMCG00006944
AMCG00006943 mRNA upstream 204333 28105608 ~ 28128135 (+) True AMCG00006943
AMCG00006942 mRNA upstream 396679 27914300 ~ 27935789 (+) True AMCG00006942
AMCG00006950 mRNA upstream 422070 27909206 ~ 27910398 (+) True AMCG00006950
AMCG00006946 mRNA downstream 3514 28368124 ~ 28401071 (+) True AMCG00006946
AMCG00006951 mRNA downstream 128825 28493435 ~ 28494011 (+) True AMCG00006951
AMCG00006952 mRNA downstream 181711 28546321 ~ 28550460 (+) True AMCG00006952
AMCG00006953 mRNA downstream 261528 28626138 ~ 28626413 (+) True AMCG00006953
AMCG00006954 mRNA downstream 485173 28849783 ~ 28855154 (+) True AMCG00006954
TU142014 other upstream 2499526 25815055 ~ 25832942 (+) True G113400
TU141973 other upstream 2714023 25618067 ~ 25618445 (+) True G113369
TU141848 other upstream 3745349 24509003 ~ 24587119 (+) False AMCG00006893
TU141783 other upstream 3996552 24304779 ~ 24335916 (+) False AMCG00006884
TU141703 other upstream 4296356 24032113 ~ 24036112 (+) False AMCG00006878

Expression Profile