RNA id: AMCG00006950



Basic Information


Item Value
RNA id AMCG00006950
length 576
RNA type mRNA
GC content 0.43
exon number 4
gene id AMCG00006950
representative True

Chromosome Information


Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 27909206 ~ 27910398 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGGATGGTGAACAGAGCTTAAGTGTGGCAGACAAGGTTAGAGAGTTAAATGAAGAGGTGCTGTTCTGGCAGGGCAAGTATGAAGAAGTGAAGGGAGAGTTGGACACGCACAAGGAGTTAGCACGCATAAGGCATCTCAGATGGGACAACAAACATAGAGAAATGGTTCAGGACATAGTCAGATGTGGGGGGTGTGACTTTGTGAGAGTGAAATTATCACAAAAATTACAATTCAATGACATTTTGTCTCAGTACAGATCAGATATTCTCACTGAGATCGTGGAAGACCTTGAACAGCACATTGAGGCTGATAAGACAGGATGTAGGTGTCttggattaatttgtaaaattgtgataGAGCCTCTTTTGAGAGTTTTGTCAAGGAAGGAACATATTCTTGAGATGAATGACAGGTATCAGGAATTTGTCCGCAAACTGAAGGCATGGCAGTCAGACGGACAGAGTTTTGTTAGAGGAGATGTTCAATTGTTCGATGATGTAGACGTGAGTGTGGAGCCTGTCCTTCAGAAAAGTACAGAGGAGACAACTGCAGATTTTGACAGCATGACTGTGCAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU142367 lncRNA upstream 52744 27856114 ~ 27856462 (+) True G113680
TU142272 lncRNA upstream 507238 27380923 ~ 27401968 (+) True G113607
TU142258 lncRNA upstream 546162 27268971 ~ 27363044 (+) True G113596
TU142255 lncRNA upstream 625886 27262231 ~ 27283320 (+) True G113594
TU142252 lncRNA upstream 648134 27260610 ~ 27261072 (+) True G113592
TU142401 lncRNA downstream 148726 28059124 ~ 28060590 (+) True G113711
TU142407 lncRNA downstream 167555 28077953 ~ 28078459 (+) True G113717
TU142441 lncRNA downstream 227953 28138351 ~ 28138938 (+) True G113741
TU142443 lncRNA downstream 230885 28141283 ~ 28142251 (+) True G113743
TU142447 lncRNA downstream 290144 28200542 ~ 28204108 (+) True G113747
AMCG00006937 mRNA upstream 78150 27811185 ~ 27831056 (+) True AMCG00006937
AMCG00006936 mRNA upstream 281873 27616135 ~ 27627333 (+) True AMCG00006936
AMCG00006933 mRNA upstream 583486 27324233 ~ 27325720 (+) True AMCG00006933
AMCG00006931 mRNA upstream 1138354 26770526 ~ 26770852 (+) True AMCG00006931
AMCG00006930 mRNA upstream 1203042 26704780 ~ 26706164 (+) True AMCG00006930
AMCG00006942 mRNA downstream 3902 27914300 ~ 27935789 (+) True AMCG00006942
AMCG00006943 mRNA downstream 195210 28105608 ~ 28128135 (+) True AMCG00006943
AMCG00006944 mRNA downstream 237440 28147838 ~ 28188827 (+) True AMCG00006944
AMCG00006947 mRNA downstream 382622 28293020 ~ 28331354 (+) True AMCG00006947
AMCG00006945 mRNA downstream 422070 28332468 ~ 28364610 (+) True AMCG00006945
TU142014 other upstream 2076264 25815055 ~ 25832942 (+) True G113400
TU141973 other upstream 2290761 25618067 ~ 25618445 (+) True G113369
TU141848 other upstream 3322087 24509003 ~ 24587119 (+) False AMCG00006893
TU141783 other upstream 3573290 24304779 ~ 24335916 (+) False AMCG00006884
TU141703 other upstream 3873094 24032113 ~ 24036112 (+) False AMCG00006878

Expression Profile