RNA id: AMCG00006958


Basic Information

Item Value
RNA id AMCG00006958
length 277
RNA type mRNA
GC content 0.58
exon number 2
gene id AMCG00006958
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 28902341 ~ 28906211 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGGGCACTCGGACGTAGCCTCGGGAATGAGCGACGGGAATGAAGGGGCTTCGGCAGCCAGTGGCAGACACGAGGGTCGCTCCACGAAGCGGCACTATCGCAAGTCTGTTGTCAGTGAGTTCATCCTGGAAACCGAGAGGGACTCCTTCATCGACCAGGTCCGGGAGATCATCGAGAGGGCAGACGAGCTGCTGAGTGAGGATGCTGGAGAGGTCCCTGAGAGCGAGCAGGGATTGGAGAGGCAGAGTATGAAAGGAAACTCTTTCTTCCCAGAGTGC

Function

GO:

id name namespace
GO:0017119 Golgi transport complex cellular_component
GO:0099023 vesicle tethering complex cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU142594 lncRNA downstream 34521 28863879 ~ 28867820 (-) True G113876
TU142539 lncRNA downstream 260904 28641129 ~ 28641437 (-) True G113823
TU142514 lncRNA downstream 494502 28407406 ~ 28407839 (-) True G113799
TU142419 lncRNA downstream 826050 28059128 ~ 28076291 (-) False G113724
TU142623 lncRNA upstream 165970 29072181 ~ 29074799 (-) True G113905
AMCG00006956 mRNA downstream 9848 28880317 ~ 28892493 (-) True AMCG00006956
AMCG00006957 mRNA downstream 33415 28867902 ~ 28868926 (-) True AMCG00006957
AMCG00006955 mRNA downstream 90862 28750262 ~ 28811479 (-) True AMCG00006955
AMCG00006949 mRNA downstream 678754 28217613 ~ 28223587 (-) True AMCG00006949
AMCG00006948 mRNA downstream 758125 28141257 ~ 28144216 (-) True AMCG00006948
AMCG00006959 mRNA upstream 24819 28931030 ~ 28966524 (-) True AMCG00006959
AMCG00006960 mRNA upstream 121201 29027412 ~ 29032897 (-) True AMCG00006960
AMCG00006967 mRNA upstream 262352 29168563 ~ 29257106 (-) True AMCG00006967
TU142549 other downstream 89793 28711219 ~ 28812548 (-) True G113833
TU142485 other downstream 609743 28267262 ~ 28292598 (-) False G113775
TU142484 other downstream 609743 28291455 ~ 28292598 (-) True G113775
TU142323 other downstream 1374993 27402600 ~ 27527348 (-) True G113645
TU142176 other downstream 2401660 26500015 ~ 26500681 (-) True G113530

Expression Profile