RNA id: AMCG00006959


Basic Information

Item Value
RNA id AMCG00006959
length 1398
RNA type mRNA
GC content 0.54
exon number 7
gene id AMCG00006959
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 28931030 ~ 28966524 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GACCGCAAGCTGTCCCGGTCAGAGAGGCAGCGCTTTAAGGAGGAGGCAGGGATGCTGAAGGGGCTCCAGCACCCCAACATTGTCCGCTTCTATGATTCCTGGGAGTCTCCGCTGAAGGGGAAGAAATGCATCGTGCTGGTGACTGAGCTTATGACATCTGGAACGCTGAAGACATATTTGAAGCGCTTCAAGGTCATGAAGATCAAAGTTCTGCGCAGCTGGTGTAGGCAAATCCTGAAAGGCCTGCAGTTCCTGCACACAAGGACCCCTCCCATAATCCATCGGGATCTCAAATGTGACAACATCTTCATCACCGGTCCCACTGGCTCTGTCAAGATCGGAGACCTGGGCTTGGCCACCCTTAAGAGGGCATCCTTTGCAAAGAGTGTCATAGGTACCCCCGAGTTCATGGCCCCTGAGATGTATGAGGAGAAGTACGACGAGTCAGTGGATGTTTATGCCTTTGGGATGTGTATGTTGGAGATGGCTACCTCAGAGTACCCGTACTCAGAGTGTCAGAATGCGGCCCAGATCTACCGCAGAGTCACCAGTGGAGTGAAGCCTGGCAGCTTCGACAAGGTAGCGATACCTGAGGTTAAAGAGATTATTGAAGGATGCATTCGCCAAAACAAGGATGAAAGATACGCCATCAAGGACCTACTGAACCACGCCTTCTTCCAGGAAGAGACAGGGGTGCGTGTGGAGCTAGCAGAGGAAGATGATGGGGAGATGATTGCTATCAAGTTGTGGCTGCGCATTGAAGATGTGAAGAAACTGAAGGGGAAGTACAAGGACAATGAAGCCATTGAGTTCTCCTTTGACCTGCAGAAGGATGTTCCAGAGGATGTGGCACAGGAAATGGTCGAGTCTGGATATGTCTGTGAAGGCGATCACAAGACCATGGCCAAGGCTATCAAGGACCGGGTATCTCTGATCAAACGCAAGCGGGAGCAGCGGCAACTGGTACGCGAGGAGCAGGAGAAGAGAAAGCTGGAGGAGCAGCAAGTAGACCTGCAGCAAGTCCTTGTCCCAGGCTCTTCTCAGACCCCAGGGGTCCCACAGAGCCACTGTACCGGACCCaccactgctgctgctcacATCCAGACAGAGCCAGAGGAACCAGAAGCAGACCAGCACCAGCAGCTGCAGTACCAACAGGCTGGCATCTCTAtggcatCTGATGGGACAGTAGACAGCGGTCAAGGATCCTCGGTCTTCTCAGAGTCTCACCTGGGCAGCCAGCCGGCCAGGTCTTACAGCTCTCCCCCAGAGCAGCCCTTGTCCTCCAGCCAGGTCACTGGATACCCATCTCCCAGCATCCAGCACAGCCAACCCCAACACCAACAAcagccgcagcagcagcagcagcagcttggaGGTTATCAACAGCCGGTTTTG

Function

GO: NA

KEGG:

id description
K08867 WNK, PRKWNK; WNK lysine deficient protein kinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU142594 lncRNA downstream 63210 28863879 ~ 28867820 (-) True G113876
TU142539 lncRNA downstream 289593 28641129 ~ 28641437 (-) True G113823
TU142514 lncRNA downstream 523191 28407406 ~ 28407839 (-) True G113799
TU142419 lncRNA downstream 854739 28059128 ~ 28076291 (-) False G113724
TU142623 lncRNA upstream 105657 29072181 ~ 29074799 (-) True G113905
AMCG00006958 mRNA downstream 24819 28902341 ~ 28906211 (-) True AMCG00006958
AMCG00006956 mRNA downstream 38537 28880317 ~ 28892493 (-) True AMCG00006956
AMCG00006957 mRNA downstream 62104 28867902 ~ 28868926 (-) True AMCG00006957
AMCG00006955 mRNA downstream 119551 28750262 ~ 28811479 (-) True AMCG00006955
AMCG00006949 mRNA downstream 707443 28217613 ~ 28223587 (-) True AMCG00006949
AMCG00006960 mRNA upstream 60888 29027412 ~ 29032897 (-) True AMCG00006960
AMCG00006967 mRNA upstream 202039 29168563 ~ 29257106 (-) True AMCG00006967
TU142549 other downstream 118482 28711219 ~ 28812548 (-) True G113833
TU142485 other downstream 638432 28267262 ~ 28292598 (-) False G113775
TU142484 other downstream 638432 28291455 ~ 28292598 (-) True G113775
TU142323 other downstream 1403682 27402600 ~ 27527348 (-) True G113645
TU142176 other downstream 2430349 26500015 ~ 26500681 (-) True G113530

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00055324 False 5748 mRNA 0.56 27 NC_007115.7 8048916 ~ 8152746 (-)