RNA id: AMCG00006962


Basic Information

Item Value
RNA id AMCG00006962
length 4165
RNA type mRNA
GC content 0.38
exon number 2
gene id AMCG00006962
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 29210193 ~ 29214986 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACCTTCTTCCTACTTCCCTACAGTAACTCTCGTTCTCATGTCTTACAGGGGGTGCATGAGTCTAAAGGAGTGACTGATGATTATCTGAAGCTGGAATCCCTGATCCAGAGGATGGTCTCTCCTTACCTGGGAACACACGGACTGTTCTCTGGTGACGGGATGGTGACACAGTGCTCCTGTGTCCTGGAAAATCGACTGTTGAGACGCTGCCCCAAGCCAGGGGAGGTGATTGGAAAAAACCCAGTGGTGCGGTCCAAGAGCTACAACAACCCCATGCTGACACCTGTGGCGGAGTACGAAATGGAGGTGGGATCTGCCAATGGGGCAGGCATTCGGCGACACTCTGTTTCCGAGATGACCTCCTGTCTTGAAGAACAGGGCTACTCCAACCTCACCACTATTATGGATGCTGGCTCCAAAGTGTCCATGGCCAAGACCAGTCTATTAGGAGAGCAGGACCTGACTCCAGGAGTAATTTTGCCTTCCCCTCACACACAGCAAGAACAGTTTGATGAACAGGACTTCAGGGCCGGGCAGCCCTCTCCTCCTGAGCTGGTTGAAGAACCATCATCCATCCAAACCTGCTCTTCTAGCCCCGAAACTATAGTGGACCAGATTTTAGAGTCCATGGACTCGGATACAGATGGAATTTTCCTGGATTTCTCGCACTGTTGTTCAGACTCCCCCAGCTACAACAAAGAAGCCAGCAGACAGAGTGTGGTGTAGTGGTGCTCTCAGGCACCTCTACAGCAGTAAAGGACAGGGTGGGGGCGAACACAGTTACTGTGTGACAATCAGCAATGCAGTATTTGATTCCAAGTAGTTTCTTGCAAGATTGCCTGATGATTTTGTAATGTCTTTTTAGCtactttgataaaaaaaaagttgtgtttttaaactgaatgttGGAATTTAATCATTAGATATTCGTGCCAAAATggcacatttcttaaaaaagagaaaaacaatcagaaatcaaaaataattcacCAAAGACACTGtatggaaaacatttgaaatgaagaACAGTTGTAAATATCATCCGTGTGGCCCTGTTATTTTAGATCTTATTTGTTGCTTACTGTCTTATAATTTTTGGTTGGTTTTCATGAAGAATTTTCTGttaactcattattattattgcagataATTGCAAATGGCTTACGAAAGATCCTGACAAACAAACCTGTTTTACCATGCAAAAACATaagggagaagaaaataaatgaaggattAAGAAAAGAGACTGAAGTGAGAGCCCATAAGTGTTGTAGTGACTAAAACGTTGAGTGCTTAAATGCTTTGCCTTGAATGCTTTGTCAGGGGTGTCTGTCCCAGTTCCTTGTTAATTCCAAATCCAGTTAGTTTTACAGGACACTAAGTTACtgatttctaaaaaaaaaaaaaaaaaaaaaattaaacttgaTCACTTGATCAGTGTAAATTCATTagaatatgcatttaaatggtgTCAAACAATGACACTTtgaatactatttatttatttgtttattgtttggtCTCTTTTTTGGTATGCCCTTCTACAGAAAGTGACGAGTTAATTGAatagtatacaaaataaatagaatttgCACTTGCACTTAGCTGGAggttttatattatgttttcagCCAAGCATAAAAACAGCTGTCATCTTCAGCTTTGCATAGGGCGTAACACCCAGGTGTGGAAATCAGGCAGCATCTTACAAACAAAGGGTCTAGGGCCGGCAAACAGGAGCAAAGGAGGTCTGGCAAAAGGCGAGGTCAGAAGAAAGGCAACGGTCAGGCGATCAAGCAAACAGCCTATACTGGGAAATCCGAGAAGACAGGGTAATAGAAACTAGCAAAGGTTAGTGAACAGAGGTTGATCTAGAAAACAGGCTTGAGATTGCTACAGGACATAAACAAAACTTTGCGAAGACTTTGGGAGCAAACTGGAATATACATTTGCGTAAAGGGCAGGTGAAACTGGAAACAGATGTGTGTGAACGGCGACCTCTAGTGGTGACATATGGGAAAGCATTGAGAAATGTTACAACAGCTAAAACTGGGAGATTGTCTATGCAACATAATGAACACACAAGATTCACTTTATATTCATTGTTGACCCAAGCAGGATTGAGCACTTGTACAGTTGGATTAACTGGGCCTGTATTTTCCAAAGCTGGTGAAAGAATCGCTCATGTGTAAGACCAGCTATTTTAATGAACTGTATCAATTGTTGGAGTTGAttgaattattgtaattttttgaggctttttgcaaacattttgtgTGAGTAGATCGGCTGTAAGCATGTTACCGTAACTCTATTAAATATAAGTACTGCCCTTACTCATTCGTAAACCCTTTACCAACTATGGAATACCAGGCTCATTGTGTGTTTAACTGGAGGGTTTGTATCACAGCAAGTAAGCCAGACACTTGTTAACTTGCACAAAGGGAAAATTAACCTGACAAGTCTCAAGATGTGAATTGAGATTTTATGTCTTTTGCATGTGCTTCTGAGATTAAAGTCACAATTATTATGGAGATTTTTAGTGAGGTTTTCAATTAAGTGTAATGCACTTAAAGGAATGTATCCACTGCAGGGAGGGATTTTATGTTTTGCTAAGCAACGATCTAGCCAGGCAGGGCCTAAATATGTGGTTTcatgtcaaatgttttttttaggaGCGTACAGTAAACTTCATATCCAGATATTTTTCCaatgtattaatacacacattttctgtttaaccTGTGCTCCCAGCCCTTTGCTAATTATACAGATCTTGTTCAACTGTGCTCACGACCTGAGCATGTATGTAGACCACTTGAAATCCAGGTCCAATGCAGATGGGTTAATATTTTCCTGCCCATTCCCATTCTGTATGTTCTACCCttaaggaaaaaaagtatttttaaaagcagattttttaCGTTGGTCATTTCTGAGAATCAGAAGAAAGAGTAGCAACTCTAAATAATGTCCTCTGGAGATTGACTCGGGAGCCTCATCTGAAGATTGTATATAGatttcagaagaaaacatgGTACACATATGTGTGAAGGCtggtctgtatatatgtattcattcaatGTATTCAAGCTCTGTTAGTTTCTACAAACAACTGTGccatattaacatattaacgGTTTTTCAACATTCCACCTGGCATTTCAAGGCATGATCAAGACTTTCCTGGCTGAGAATTTCAATGTTTGTGCTTTTGAGTGTCATAAGGAAAAGTAatataatcatttaaattgaaCCATTGAGCTATTGTATGCACTTACTTCTCTAATTCATCAACCCTGAGACTTTCAGTGCTTAGGGCagtctttcaaaatgtcaattcTAGACTTTGCTATaggaaattatacaaaaagatAGCTTAATAATTTCCATTACAATTTAGGAGATGTACAAATACTTATACTACTTACATACAAAAGCAGAACTTTTAAGTAGAATATTGTATCTGCACTATATTACTAAATGTATTAGGATACCAGCCAGACCTCcctgctgctttgtttttttgggaAGGTGGAAGGACTCCCCTGAGGCCTTGGATGAAGTTaaaaaggagaaggaaaagTTAAGCATTATTTGAAGGAAGATGGGTCTTGttgtaaatatgaatgtataatttCTGAGATACATCTGGCATATATCAAACCTTTAGTCTATATGATGACAACCAAATGTCTAACAGACAAGTCTTCTCCAACAGATGTAAAGCaacaaaaggatttttttttttttactgtgttaAATTAGATGCTTCGGATGTACATAAGTTGCCACCATCGAACACTTTTCATAAAGTACTTGTGGTATTGAGGACCATTAAATAACTGCCCTGTTTTCTGTTATGGGAATGagcttaaaatgtcaaaatacaatgcaattactacattttttaatatatctaaATCTACAGTGTGAAAGCACTGACAGTTaaccacattttaattatatttggaGCATTTCAATTCTGTAAGggataatgttacattttatttaaacaatggaaaaaagccatcagtttattcagtttttcattctGGGTAGGAATTGTGATTTAAGAATCAACACATTTATGTTCCTAAGAAATGTGGTCTGTTTAAAgactattaaaagaaaaaataaataaacatctggTTTCACAGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU142612 lncRNA upstream 139010 29070819 ~ 29071183 (+) True G113894
TU142565 lncRNA upstream 340867 28869059 ~ 28869326 (+) True G113847
TU142564 lncRNA upstream 341205 28868726 ~ 28868988 (+) True G113846
TU142552 lncRNA upstream 380128 28829659 ~ 28830065 (+) True G113836
TU142540 lncRNA upstream 562670 28647265 ~ 28647523 (+) True G113824
TU142651 lncRNA downstream 22217 29237203 ~ 29240687 (+) True G113925
TU142686 lncRNA downstream 111057 29326043 ~ 29326264 (+) True G113955
AMCG00006963 mRNA upstream 32958 29174902 ~ 29177235 (+) True AMCG00006963
AMCG00006961 mRNA upstream 88387 29117577 ~ 29121806 (+) True AMCG00006961
AMCG00006954 mRNA upstream 355039 28849783 ~ 28855154 (+) True AMCG00006954
AMCG00006953 mRNA upstream 583780 28626138 ~ 28626413 (+) True AMCG00006953
AMCG00006952 mRNA upstream 659733 28546321 ~ 28550460 (+) True AMCG00006952
AMCG00006966 mRNA downstream 18660 29233646 ~ 29235193 (+) True AMCG00006966
AMCG00006964 mRNA downstream 20262 29235248 ~ 29238470 (+) True AMCG00006964
AMCG00006965 mRNA downstream 25530 29240516 ~ 29248059 (+) True AMCG00006965
TU142014 other upstream 3377251 25815055 ~ 25832942 (+) True G113400
TU141973 other upstream 3591748 25618067 ~ 25618445 (+) True G113369
TU141848 other upstream 4623074 24509003 ~ 24587119 (+) False AMCG00006893
TU141783 other upstream 4874277 24304779 ~ 24335916 (+) False AMCG00006884
TU141703 other upstream 5174081 24032113 ~ 24036112 (+) False AMCG00006878

Expression Profile