RNA id: TU135427


Basic Information

Item Value
RNA id TU135427
length 337
lncRNA type inter_gene
GC content 0.50
exon number 3
gene id G108312
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 708057 ~ 708928 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tgtgtgtgtgtgttgttgcagGTTTGGTATCAGGTGTAACTGTGTTTTGCCCGGCTTCATTTCCACTCCCATGACTGACAAGGTGCCTCACAAAGTCATTGACAAGATCACCTCTATGGTTCCTCAGGGGCGGATGGGGGAGCCGGCAGGAGGCCTGTTCATTGGCTGAGATAGGCCATGCCTTCACACCTTTGGAATCCTAAAATAAAAGGGAGGACCAATCAGAATGAAGCTTGTTGCACTCCCCCAGTGCCTTAGTGTCTGTAGGAAGGCGTGCTGTGATTGGGTGACATCTGCCCTGTGTTGTAAAGCATAGCTAACCTGCAGAAACAATGTG

Function

GO: NA

KEGG:

id description
ko03010 Ribosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU135408 lncRNA upstream 55917 649737 ~ 652140 (+) False AMCG00006236
TU135368 lncRNA upstream 272436 435401 ~ 435621 (+) True G108263
TU135359 lncRNA upstream 302717 384397 ~ 405340 (+) True G108256
TU135353 lncRNA upstream 302793 397163 ~ 405264 (+) True G108252
TU135354 lncRNA upstream 315264 374136 ~ 392793 (+) True G108253
TU135429 lncRNA downstream 18949 727877 ~ 730186 (+) True G108314
TU135434 lncRNA downstream 64731 773659 ~ 774039 (+) True G108318
TU135422 lncRNA downstream 73097 782025 ~ 782475 (+) True G108308
TU135441 lncRNA downstream 81048 789976 ~ 790833 (+) True G108322
TU135710 lncRNA downstream 224587 933515 ~ 933825 (+) True G108496
AMCG00006236 mRNA upstream 57234 644718 ~ 650823 (+) True AMCG00006236
AMCG00006237 mRNA upstream 74243 610467 ~ 633814 (+) True AMCG00006237
AMCG00006234 mRNA upstream 131800 569404 ~ 576257 (+) True AMCG00006234
AMCG00006233 mRNA upstream 145792 547826 ~ 562265 (+) True AMCG00006233
AMCG00006235 mRNA upstream 216260 490705 ~ 491797 (+) True AMCG00006235
AMCG00006246 mRNA downstream 137686 846614 ~ 855720 (+) True AMCG00006246
AMCG00006252 mRNA downstream 180150 889078 ~ 895444 (+) True AMCG00006252
AMCG00006250 mRNA downstream 188050 896978 ~ 908806 (+) True AMCG00006250
AMCG00006251 mRNA downstream 215686 924614 ~ 929086 (+) True AMCG00006251
AMCG00006249 mRNA downstream 223231 932159 ~ 946648 (+) True AMCG00006249
TU135365 other upstream 274152 429763 ~ 433905 (+) True AMCG00006231
TU135311 other upstream 528655 177138 ~ 179402 (+) True AMCG00006205
TU135297 other upstream 570036 134067 ~ 138021 (+) False AMCG00006208
TU135436 other downstream 65881 774809 ~ 791062 (+) False G108319
TU135437 other downstream 65881 774809 ~ 791062 (+) True G108319
TU135656 other downstream 137633 846561 ~ 848772 (+) False AMCG00006246
TU135722 other downstream 276945 985873 ~ 990822 (+) False AMCG00006256
TU135810 other downstream 571773 1280701 ~ 1286052 (+) True AMCG00006276

Expression Profile