RNA id: TU135429


Basic Information

Item Value
RNA id TU135429
length 219
lncRNA type inter_gene
GC content 0.60
exon number 5
gene id G108314
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 727877 ~ 730186 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGACGTTCCCTTGGCTCCTGGTTTCCCTGTAGCTCCTCGGGGGCCTCTCTGACCTCTGGGACCcgTGGGGCCTCTCTGTCCTCTGGGCCCAGACTTGCCAATCAAaccCCTCGCTCCCTTCTCGCCATTTGTACCGGGGAATCCTGGGAAACCGAGGGAtccCTTGGGTCCTTGTCTTCCAGGATATCCAGGCAGTCCAGGAACACCCAGTTTACCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU135427 lncRNA upstream 18949 708057 ~ 708928 (+) True G108312
TU135408 lncRNA upstream 75737 649737 ~ 652140 (+) False AMCG00006236
TU135368 lncRNA upstream 292256 435401 ~ 435621 (+) True G108263
TU135359 lncRNA upstream 322537 384397 ~ 405340 (+) True G108256
TU135353 lncRNA upstream 322613 397163 ~ 405264 (+) True G108252
TU135434 lncRNA downstream 43473 773659 ~ 774039 (+) True G108318
TU135422 lncRNA downstream 51839 782025 ~ 782475 (+) True G108308
TU135441 lncRNA downstream 59790 789976 ~ 790833 (+) True G108322
TU135710 lncRNA downstream 203329 933515 ~ 933825 (+) True G108496
TU135742 lncRNA downstream 336850 1067036 ~ 1067725 (+) True G108513
AMCG00006236 mRNA upstream 77054 644718 ~ 650823 (+) True AMCG00006236
AMCG00006237 mRNA upstream 94063 610467 ~ 633814 (+) True AMCG00006237
AMCG00006234 mRNA upstream 151620 569404 ~ 576257 (+) True AMCG00006234
AMCG00006233 mRNA upstream 165612 547826 ~ 562265 (+) True AMCG00006233
AMCG00006235 mRNA upstream 236080 490705 ~ 491797 (+) True AMCG00006235
AMCG00006246 mRNA downstream 116428 846614 ~ 855720 (+) True AMCG00006246
AMCG00006252 mRNA downstream 158892 889078 ~ 895444 (+) True AMCG00006252
AMCG00006250 mRNA downstream 166792 896978 ~ 908806 (+) True AMCG00006250
AMCG00006251 mRNA downstream 194428 924614 ~ 929086 (+) True AMCG00006251
AMCG00006249 mRNA downstream 201973 932159 ~ 946648 (+) True AMCG00006249
TU135365 other upstream 293972 429763 ~ 433905 (+) True AMCG00006231
TU135311 other upstream 548475 177138 ~ 179402 (+) True AMCG00006205
TU135297 other upstream 589856 134067 ~ 138021 (+) False AMCG00006208
TU135436 other downstream 44623 774809 ~ 791062 (+) False G108319
TU135437 other downstream 44623 774809 ~ 791062 (+) True G108319
TU135656 other downstream 116375 846561 ~ 848772 (+) False AMCG00006246
TU135722 other downstream 255687 985873 ~ 990822 (+) False AMCG00006256
TU135810 other downstream 550515 1280701 ~ 1286052 (+) True AMCG00006276

Expression Profile