RNA id: TU135434


Basic Information

Item Value
RNA id TU135434
length 381
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G108318
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 773659 ~ 774039 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATCCTCTTTCCTTCCTGACACACTGGGCTCTGagacactgaaacaaaaactgtgCATTACTCACCGGGTTTGTAAAGGTGCGTGAACGAtagtgccagtgtgtgtgtgtgatgaagaGACTGtgaccgtgtgtgtgtgagatcgACTCTTTGTTCCCAGATCAAGAGCTCTTGTGCCAGTTTATAGTCTCAGTGCTTTACTGTGTGTATGAGTATGAGAGTCCCGTTTTAGAGAGTAAATCCCAGTCTGATCTCCCCCTTGTGATCTCTCACCTGGCAGGACAGAGCCAGTTACACgcccagtcagtgtgtcagtcagtgcgtcagtcagtcagtgacgCTCTGCTGTAGTTTAGTACTGGTAGATTGTTGGAGATGGATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU135429 lncRNA upstream 43473 727877 ~ 730186 (+) True G108314
TU135427 lncRNA upstream 64731 708057 ~ 708928 (+) True G108312
TU135408 lncRNA upstream 121519 649737 ~ 652140 (+) False AMCG00006236
TU135368 lncRNA upstream 338038 435401 ~ 435621 (+) True G108263
TU135359 lncRNA upstream 368319 384397 ~ 405340 (+) True G108256
TU135422 lncRNA downstream 7986 782025 ~ 782475 (+) True G108308
TU135441 lncRNA downstream 15937 789976 ~ 790833 (+) True G108322
TU135710 lncRNA downstream 159476 933515 ~ 933825 (+) True G108496
TU135742 lncRNA downstream 292997 1067036 ~ 1067725 (+) True G108513
TU135744 lncRNA downstream 296288 1070327 ~ 1070771 (+) True G108515
AMCG00006236 mRNA upstream 122836 644718 ~ 650823 (+) True AMCG00006236
AMCG00006237 mRNA upstream 139845 610467 ~ 633814 (+) True AMCG00006237
AMCG00006234 mRNA upstream 197402 569404 ~ 576257 (+) True AMCG00006234
AMCG00006233 mRNA upstream 211394 547826 ~ 562265 (+) True AMCG00006233
AMCG00006235 mRNA upstream 281862 490705 ~ 491797 (+) True AMCG00006235
AMCG00006246 mRNA downstream 72575 846614 ~ 855720 (+) True AMCG00006246
AMCG00006252 mRNA downstream 115039 889078 ~ 895444 (+) True AMCG00006252
AMCG00006250 mRNA downstream 122939 896978 ~ 908806 (+) True AMCG00006250
AMCG00006251 mRNA downstream 150575 924614 ~ 929086 (+) True AMCG00006251
AMCG00006249 mRNA downstream 158120 932159 ~ 946648 (+) True AMCG00006249
TU135365 other upstream 339754 429763 ~ 433905 (+) True AMCG00006231
TU135311 other upstream 594257 177138 ~ 179402 (+) True AMCG00006205
TU135297 other upstream 635638 134067 ~ 138021 (+) False AMCG00006208
TU135436 other downstream 770 774809 ~ 791062 (+) False G108319
TU135437 other downstream 770 774809 ~ 791062 (+) True G108319
TU135656 other downstream 72522 846561 ~ 848772 (+) False AMCG00006246
TU135722 other downstream 211834 985873 ~ 990822 (+) False AMCG00006256
TU135810 other downstream 506662 1280701 ~ 1286052 (+) True AMCG00006276

Expression Profile