RNA id: TU135436


Basic Information

Item Value
RNA id TU135436
length 1313
RNA type TUCP
GC content 0.50
exon number 2
gene id G108319
representative False

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 774809 ~ 791062 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGGTTCATAGGGAACTGTATTAAACTCTTAGTGTGACAGATACAGGAACAGACACACCCGCAGCCTCCAGGACGGGCAGCCCGGCGCCCCTGCGTCGCAGCacagaaattaaactaaacGGAACAGAAAAACCCAACAACATCCGAGCAGTCGGCACGAGTCAAATTCACTCCGGGAGAGTCGAAAAGAGTTATAATGACAATAACAGgactagtagtagtaatagcagTAGCCAAGAAAATCaaagagacaaacaaaacagacaacaacaaaaaaaaatatatatatataattccgTTAGAAGATTCTAGAAGACGCTGAGAATTCCGGGGGAATCCAGGATTTTCCGAGGGACACGGAGAGAGTCAGTGATCCACAGTTATTTAGGCAGTCAATGCAGGGAGAGTCCATTGTTTTGCTGGCTTCGTTTAGGGAGTCAATACGGGTGGGGTCCAGGGAGCCCCAGAGAGAGGCGTGGGAGGCTGTGGGGGGACAGTCCGGGCCCCGGCGGCCCCTCAGTCGGGATCCAGGGGCTCGAAGCAGGGAATCCGTCCTCTCAGTTTTCCtccatttttataaaatatatttgtcttctTTCCCCTCCTTGGCCTCATGGAAAAACCCACATTcgctttcctctctctctcataatcTTCCATCTTTCCTTTATTTGTCCTTCTCCCGACACTTCAGAGCCTTCGTAATTAAAATCGTGGGAGTcaaaatgaagtaaaatataGCTGTGTCTGAAGTCTCTGGATCAGAGGACAGGcggagaggagagggggtggAGGCGCATCCTCATATAGGCTGTCTTTTGTTGTTAAAATGGACAGTCAAGTCACATGACCTCAGACTGCAGTGGCAGGGCTGGACCagacagcacccccccccccgctgcaCTGCCTCTGTTAGGACCTGCACCCAATACATCCAGCCCCATTACCAccccgacacacacacgcacacagggcCCTggaacatacacacacactgtacctcATATACAGCACTTACACCCTGGCTGGAGCAGTGCCCATCACACTGtgcctgtacacacacactggacttGCATTCAGACCCAATACAGTGTACGCAAGTACACAAATACTGGCCACTACACTACAGtcacacagcgctgctccacTCTGGGccctatactacactatactttACTGCAGCCCCCACagtgctgctccagtctgggccctgtATCTGGTATAAACTGTGTAAGTTCAGGGtgtgtactttttcttttcatatgcagacagggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU135434 lncRNA upstream 770 773659 ~ 774039 (+) True G108318
TU135429 lncRNA upstream 44623 727877 ~ 730186 (+) True G108314
TU135427 lncRNA upstream 65881 708057 ~ 708928 (+) True G108312
TU135408 lncRNA upstream 122669 649737 ~ 652140 (+) False AMCG00006236
TU135368 lncRNA upstream 339188 435401 ~ 435621 (+) True G108263
TU135710 lncRNA downstream 142453 933515 ~ 933825 (+) True G108496
TU135742 lncRNA downstream 275974 1067036 ~ 1067725 (+) True G108513
TU135744 lncRNA downstream 279265 1070327 ~ 1070771 (+) True G108515
TU135746 lncRNA downstream 280232 1071294 ~ 1071772 (+) True G108516
TU135751 lncRNA downstream 371802 1162864 ~ 1193441 (+) True G108519
AMCG00006236 mRNA upstream 123986 644718 ~ 650823 (+) True AMCG00006236
AMCG00006237 mRNA upstream 140995 610467 ~ 633814 (+) True AMCG00006237
AMCG00006234 mRNA upstream 198552 569404 ~ 576257 (+) True AMCG00006234
AMCG00006233 mRNA upstream 212544 547826 ~ 562265 (+) True AMCG00006233
AMCG00006235 mRNA upstream 283012 490705 ~ 491797 (+) True AMCG00006235
AMCG00006246 mRNA downstream 55552 846614 ~ 855720 (+) True AMCG00006246
AMCG00006252 mRNA downstream 98016 889078 ~ 895444 (+) True AMCG00006252
AMCG00006250 mRNA downstream 105916 896978 ~ 908806 (+) True AMCG00006250
AMCG00006251 mRNA downstream 133552 924614 ~ 929086 (+) True AMCG00006251
AMCG00006249 mRNA downstream 141097 932159 ~ 946648 (+) True AMCG00006249
TU135365 other upstream 340904 429763 ~ 433905 (+) True AMCG00006231
TU135311 other upstream 595407 177138 ~ 179402 (+) True AMCG00006205
TU135297 other upstream 636788 134067 ~ 138021 (+) False AMCG00006208
TU135656 other downstream 55499 846561 ~ 848772 (+) False AMCG00006246
TU135722 other downstream 194811 985873 ~ 990822 (+) False AMCG00006256
TU135810 other downstream 489639 1280701 ~ 1286052 (+) True AMCG00006276
TU135836 other downstream 559321 1350383 ~ 1429987 (+) True G108585
TU135921 other downstream 944870 1735932 ~ 1739267 (+) True AMCG00006294

Expression Profile