RNA id: TU135453


Basic Information

Item Value
RNA id TU135453
length 3456
RNA type TUCP
GC content 0.48
exon number 3
gene id G108324
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 85489 ~ 225141 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TcacaggaaaaaacacagagacTAGGATTCACccaaatatactttatttttttgaaagccaaacaaatacattttttcaaacatAAGATCCCCCCCATCAGAGTCCTGGTTCTATTTAAACAGCAAAACTAAAAAAGGGGTTGTGTTATTTTACACAGAATTGAGACAGATCAGTGATTTTCTCTGGTTAAACTGCTGAGAGACTCTGACCCTGAATTTAGAAACAATGCGATATGTTTTTATCGATCAGACCAGCCTGCTGCTCGTGTTTCCTGGTCACTGGTCCCCAATCCTGGCCCCGGGGAGCCCCTGCCTGAGACCACCGACCCCGGTCACCACAGAATGACCAACCCCTCGGCTGTGATGACTGACATGTGGACAGACAGGCggttactgtatttattaagatggaatgaaataaaatggtttgAGGAGCTTAATTCTTAACAAGACGCTGAGATTAAAGATAATTATAAATCCCTACCCCCCTACCCCCcagtattaaaaacacacaaacaataaaacattaaaataaaattaaacctcCACCGCTCTTACAATAATGAAAGTAAatctcaatcaatcaatcaatcaatcatctgtatatatatatatatatatattcagaggtgtctgtgtccgtgtgtgtcaCTGTCCCACGGTGTCCCAGGCAGGACTGTGCTCGGCCTGAAGACACTGCCCAGTCTGACTGACTCACTCAGAGCGGAGAGCCTGTATGAGCCTGGCAGCCGCTCTTACCCAGGTTACTGGGACACAGTGGCCCTGTGCTCAGGACTGGGATGGGCGCTGCAGAGGGGCAGCCTTGTACTCAGCAGTCCTGGGGGGTCTGGACCCCGCTGCCTGGCCACGCCCTGAAGCCAGGGACAGGTTTGTCAATTTTGTGGCCCCAATCAAAGATCAGTTTAGGGGCCCCTCCACCTGTCATGCCAATCGTATTGTTACCACACAGCAGTGACCTCTCACCAGTCCCTGTCAGATGTTGCTCATTATGGAGTCAAGCTGAGCCAAAGCTCTATCTGTCCATGGAAGCGGCCATAATGGGGCTCAACAAGTCTCTGAATGTCCTTTTAACATTACGTTCTGCTCAATGACAAACACTGGCAATTATTCTGCTCAACGCAGCCCTGCAGGGCTCACTGTCACAGCCTGTCATTCCTGACTGGCACTGTCTATGGTTTTGCCAGGTTTCAGCCTTTCGTCTAATTCACGCCAGCTCTGCATGTTGGCTCGGTGTGACCTGCCCTTTGCATGCCCTTTCAGGCAGCTCTGCAGAGCTCTCCGAGGAAACTAGCCACTGACGAGGCTTTTCACTTTCTTTGGGTAATTCTGTAAAACGAAGTGGGAGTTTGTCAAAGTTTTGAACTGGCCCCCTTTCCATCAGCTGTGGATGCTGTGGGCTCTGTGGGCTGTTGGGGTTCAGTGGGTTCAGTGGGCTGTGGACAGGGGGCTCTGTGCAACGGACACACAGGGAGCACAAGACAAAGCTAAATCAGCACTATatacacagagcagagagaaacacagagacagtgcaaaaataaaatgaataatcatCACCACAGACAGTGGAGCTGCTCTATAAACGGTGTCAGTCCAAGCTCAGACTTGGGGTTTGGGATAAAGGTTTAAAACGAGACTGCTGTTAATACACAAggtttgtgacattttaaaacatgtgtCCTTATTCAAATCTGAAGTGCGCGGATATTTCAGCCACTGTGTAAAAgcagtgggtgtgtgtgtatgtgtgtgagagagagagagtcagtgtgtgtgtgggagtgagtgagtgtccGTGGGAGTCACTGTGTGTGGGAGTGAGTGTCTGAGAGCAGCTCCAGTGTCTATGGTCTCTATAGGCTGTAAttattgagtgtgtgtgtgtgtatgagattGAGGTTTTGTGAGCCTCAGGCTTTGGCAGCCCCGTTGTCTGAAGACCTGTCAGACCCGCTGTCACTGGCTgcaatagagacacacacagttacacacagacataacaCACAGTGAATAATAAACAGAGCTGTTGGCGTGAGTGTGTTTAAGCCGATATGAGCGGGTGTGTAAAGTGCACTTACTCTGAGCAGGGTTGTACTTCGTAGCTGtaggaaagaaaacagacacaggGTTACTGtcagagactgtgtgtgtgtgtgtgtgtgtgtgtctctctctcaaattcaaattcaaaaggtgctttattggcatgactgtGGTGAGGTTTGTCAAAGCAGTTTCCATATTGAGacacactgaaatgtaaaatactctcGTGtgtgtgcttctctctctctctcactatattCCTcactttgtctctctgtgtctctcagtgccTGCTGGTTAGTGCCGAGTGTTGATAATCAAACGACAGTCACAGAGATAGACAACAGGGGGTCAATACTGCACTGagtctctctcaaattcaaatttgctttattgacatgacatgGGATGTTTTGCCATGTCTCTCTCACCTGATCTCTTCTTCCAGATGACAACCCCGACAATGGCAGCGATCAGGACCAGGACTGCAGCTATGATCACACCGACGATCACCGCCAGGTTAGAGGGGGgcacCCCATGTCTTGATGAGGATCTTCCCTCCCACATGGTCCACATGGCAGGTGTAGCTCCCCTCAGGCGAGACCCTCACGCTCTTCCTGACCTGGAACGTCCCGTCCCCATTGGACAGCAGCTCCCCGCTCTCCACCCCCTCGTGCAGCTCCTGTCCGTCTCTCTTCCAGGACACCAATATGTCTTTGGGGAAGAAGCCCGTGGCCAGGCAGGACACAGGGGAACTGGGGTCCCTCTGGAACAGAGACACCTGGGGGGCGACTGGAGAGGGAAACAGCGCGTGTTTTAGACCTTGCACTGGACTGTGTAGTGACAGTGTGTGCCTGGGTCTCTATGGCAGAGTGAGGGGCGCCTGCTGTTTCAGTGTTGTAGTGAATGAGAGAACAGCGGCTCAGAGACTACAGGGCATCACAGCGGCTCACCGACCCCTGGCACAGCTGGCACAGCCGAATCTCCAGCTCTAACAAATTTGCTTTAAATTTCTAAGACAAACGGTGAAAGAAAAGTGGATACAAATTTAAAGTTATcttttatgaattaaaaattgCAATTCTCGAACCCGAGATTTCCCCCCTAAGTCAGTATCTCCTCACAGcaacatcatttgaaagcccaAAGCTTCTAGTTTCCAGGTATATAAAAACGTATATAATAGTGCCAGagatatatgtattaataacagTCCATTGGCGGGCTGTGTTTAGGGCTGACGACACGTTTCTTACATCTATGTAACATGTGCCCAAATCCGCCCCGTCTGGTCCACTGCAGTCGGACCCTGCGCCGCAGCTGGACTGTGCGAGAGCCCACCTACCTTTCCTCTCCAGAGTCTGCCTGCCGTAGCCGACGTACTTCTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU135462 lncRNA downstream 46078 140559 ~ 175193 (-) True G108330
TU135481 lncRNA downstream 102872 117137 ~ 118399 (-) True G108349
TU135461 lncRNA downstream 181922 33213 ~ 39349 (-) True G108329
TU135442 lncRNA downstream 199921 17554 ~ 21350 (-) True G108323
TU135502 lncRNA upstream 45615 270756 ~ 278261 (-) True G108365
TU135526 lncRNA upstream 108647 333788 ~ 343011 (-) False G108379
TU135528 lncRNA upstream 111595 336736 ~ 343011 (-) False G108379
TU135507 lncRNA upstream 140137 365278 ~ 368624 (-) True G108366
TU135552 lncRNA upstream 210260 435401 ~ 435621 (-) True G108397
AMCG00006219 mRNA downstream 25922 181384 ~ 195349 (-) True AMCG00006219
AMCG00006214 mRNA downstream 48889 165920 ~ 172382 (-) True AMCG00006214
AMCG00006213 mRNA downstream 55753 163602 ~ 165518 (-) True AMCG00006213
AMCG00006210 mRNA downstream 71210 147371 ~ 150061 (-) True AMCG00006210
AMCG00006209 mRNA downstream 74873 142072 ~ 146398 (-) True AMCG00006209
AMCG00006220 mRNA upstream 11185 236326 ~ 242133 (-) True AMCG00006220
AMCG00006222 mRNA upstream 31196 256337 ~ 262432 (-) True AMCG00006222
AMCG00006221 mRNA upstream 38496 263637 ~ 266881 (-) True AMCG00006221
AMCG00006229 mRNA upstream 62550 287691 ~ 290685 (-) True AMCG00006229
AMCG00006228 mRNA upstream 71065 296206 ~ 299137 (-) True AMCG00006228
TU135530 other upstream 111595 336736 ~ 339948 (-) True G108379
TU135541 other upstream 170283 395424 ~ 395979 (-) False AMCG00006232
TU135562 other upstream 254441 479582 ~ 546146 (-) False AMCG00006241
TU135628 other upstream 506300 731441 ~ 735410 (-) False AMCG00006245
TU135631 other upstream 512119 737260 ~ 740289 (-) False AMCG00006245

Expression Profile