RNA id: TU135461


Basic Information

Item Value
RNA id TU135461
length 782
lncRNA type sense_over
GC content 0.47
exon number 2
gene id G108329
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 33213 ~ 39349 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTGGAGGACACTGATACAcaatacactgtacacacagtaTAGAAACGAGAAGGACAGACaggcacaaacaaacacacagacagatacacgtacacacagacacaaacatagaGTCAAactgacagacatacagacagacacagacggTACCTGTTAAAGTCGCTCGCTTCCTCCAGCGTCCGTCCGTCGGTGGAACTAACTGACAAACCCGACATCAAACTCTCGctctctatctttctatctctctatctctctatctaccGCTCTAACTTATCTGTCTATATCTGACACATCGTGTCTGCGTCCgtgtgtccgtctgtgtgtcagtgtgtcagtcagtcaagcCGTCAGTGTCACAGTACCAGTATtgctgtgcctctctctctctctctctctctctgcgtgtcagtctgtctgtaaatcagtcctgtcctctctctctgagtgtctgtctgtctgtctgtctgtcagtcctgtcctctctctgcGCGTTGTCGTACAGGCGCGTTTAAAGATCCGCCTTGCAGGAGTCCGCCGGAGACGCCATCGCCTCTCTCTCGACTTGTTGTGACGCAGAGATAAAACGGAGACGGAGAAGTGAactgaaatgagagagagagagagagagagagagaNNNNNNNNNNNNNNgagagagagagagaggaagaaagggagacagaatttaatttaattgtatgatGGTTTCCCTgctatatatgcacacacatatcttgtttcctttctatttcaatatttcactgctttggcaacactgatgaCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU135442 lncRNA downstream 11863 17554 ~ 21350 (-) True G108323
TU135447 lncRNA upstream 46140 85489 ~ 225141 (-) False G108324
TU135481 lncRNA upstream 77788 117137 ~ 118399 (-) True G108349
TU135445 lncRNA upstream 89376 128725 ~ 225141 (-) False G108324
TU135452 lncRNA upstream 89376 128725 ~ 225141 (-) False G108324
TU135462 lncRNA upstream 101210 140559 ~ 175193 (-) True G108330
AMCG00006211 mRNA upstream 30970 70319 ~ 89489 (-) True AMCG00006211
AMCG00006212 mRNA upstream 60553 99902 ~ 108542 (-) True AMCG00006212
AMCG00006209 mRNA upstream 102723 142072 ~ 146398 (-) True AMCG00006209
AMCG00006210 mRNA upstream 108022 147371 ~ 150061 (-) True AMCG00006210
AMCG00006213 mRNA upstream 124253 163602 ~ 165518 (-) True AMCG00006213
TU135453 other upstream 181922 221271 ~ 225141 (-) True G108324
TU135530 other upstream 297387 336736 ~ 339948 (-) True G108379
TU135541 other upstream 356075 395424 ~ 395979 (-) False AMCG00006232
TU135562 other upstream 440233 479582 ~ 546146 (-) False AMCG00006241
TU135628 other upstream 692092 731441 ~ 735410 (-) False AMCG00006245

Expression Profile