RNA id: TU135462


Basic Information

Item Value
RNA id TU135462
length 496
lncRNA type read_through
GC content 0.49
exon number 2
gene id G108330
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 140559 ~ 175193 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCAAGTCCagactttattaaaatatattccttcAAACAGCattataaacacaattattaacaCACATTATGATCCACAGGTGCAGAGAGAGCAGCGCAACCATCAAAACACAACCCTCCAATCTGCATCTCCGAGACACACACCAGGAACAGGAGGCACTGCTGTACAGCGAGACTGACACACCCGCCACCATGTCAGCTACTGATAATGACTGACTGattcacacagacatacagacacacccAGACAGTTACAggcagactctctctctctctctctctctctctctctctctcacacacaatgacaaatacatacaaagtgTTCTTATATACACAcctacactctctctctctctcactcatcTCTCacaatcactctctctctctctctctctaagtgACGTCACTCTCCCGCACTCCCACCTTGCACACGTCATCCTCGCCACAGACGCCCCCCCTGGCACCACCGAACCCCCCCACACCGTGCTGCGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU135481 lncRNA downstream 22160 117137 ~ 118399 (-) True G108349
TU135461 lncRNA downstream 101210 33213 ~ 39349 (-) True G108329
TU135442 lncRNA downstream 119209 17554 ~ 21350 (-) True G108323
TU135502 lncRNA upstream 95563 270756 ~ 278261 (-) True G108365
TU135526 lncRNA upstream 158595 333788 ~ 343011 (-) False G108379
TU135528 lncRNA upstream 161543 336736 ~ 343011 (-) False G108379
TU135507 lncRNA upstream 190085 365278 ~ 368624 (-) True G108366
TU135552 lncRNA upstream 260208 435401 ~ 435621 (-) True G108397
AMCG00006212 mRNA downstream 32017 99902 ~ 108542 (-) True AMCG00006212
AMCG00006211 mRNA downstream 51070 70319 ~ 89489 (-) True AMCG00006211
AMCG00006203 mRNA downstream 96432 10483 ~ 44127 (-) True AMCG00006203
AMCG00006219 mRNA upstream 6191 181384 ~ 195349 (-) True AMCG00006219
AMCG00006220 mRNA upstream 61133 236326 ~ 242133 (-) True AMCG00006220
AMCG00006222 mRNA upstream 81144 256337 ~ 262432 (-) True AMCG00006222
AMCG00006221 mRNA upstream 88444 263637 ~ 266881 (-) True AMCG00006221
AMCG00006229 mRNA upstream 112498 287691 ~ 290685 (-) True AMCG00006229
TU135453 other upstream 46078 221271 ~ 225141 (-) True G108324
TU135530 other upstream 161543 336736 ~ 339948 (-) True G108379
TU135541 other upstream 220231 395424 ~ 395979 (-) False AMCG00006232
TU135562 other upstream 304389 479582 ~ 546146 (-) False AMCG00006241
TU135628 other upstream 556248 731441 ~ 735410 (-) False AMCG00006245

Expression Profile