RNA id: TU135481


Basic Information

Item Value
RNA id TU135481
length 328
lncRNA type inter_gene
GC content 0.66
exon number 3
gene id G108349
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 117137 ~ 118399 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACCACCCGATTGGCTGGTTGGCGTCTCTACGGCACACCGAGAGGGACAAACCTCCCTCCGTCTCCCGCTTGAAGCGCTCGACAATGGCGTCGGTGTGATACGCGGCGCTGCTCAATCTTCCACACTGTGTATTTGTTGACCGCGCTGCTgtggtttgttcatgttttctcCGGCCGGGACGGGCAGCACAGCCTCGGCCGCCCCGCAGTGAGAGGCGACAGCAGTGAGGCGGAGCCGGGCGGCAGGGTCGCGTTTCTGCCCGGAGACCAGCCGCAGCCGCGCAGgtgCCATGTCCGGCTGCAGCGCTGAGGGGGGCGTGTGGGAGGTG

Function

GO:

id name namespace
GO:0002011 morphogenesis of an epithelial sheet biological_process
GO:0055113 epiboly involved in gastrulation with mouth forming second biological_process
GO:0090504 epiboly biological_process
GO:0001702 gastrulation with mouth forming second biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU135461 lncRNA downstream 77788 33213 ~ 39349 (-) True G108329
TU135442 lncRNA downstream 95787 17554 ~ 21350 (-) True G108323
TU135445 lncRNA upstream 10326 128725 ~ 225141 (-) False G108324
TU135452 lncRNA upstream 10326 128725 ~ 225141 (-) False G108324
TU135462 lncRNA upstream 22160 140559 ~ 175193 (-) True G108330
TU135451 lncRNA upstream 34833 153232 ~ 225141 (-) False G108324
TU135444 lncRNA upstream 42762 161161 ~ 225141 (-) False G108324
AMCG00006212 mRNA downstream 8595 99902 ~ 108542 (-) True AMCG00006212
AMCG00006211 mRNA downstream 27648 70319 ~ 89489 (-) True AMCG00006211
AMCG00006203 mRNA downstream 73010 10483 ~ 44127 (-) True AMCG00006203
AMCG00006209 mRNA upstream 23673 142072 ~ 146398 (-) True AMCG00006209
AMCG00006210 mRNA upstream 28972 147371 ~ 150061 (-) True AMCG00006210
AMCG00006213 mRNA upstream 45203 163602 ~ 165518 (-) True AMCG00006213
AMCG00006214 mRNA upstream 47521 165920 ~ 172382 (-) True AMCG00006214
AMCG00006219 mRNA upstream 62985 181384 ~ 195349 (-) True AMCG00006219
TU135453 other upstream 102872 221271 ~ 225141 (-) True G108324
TU135530 other upstream 218337 336736 ~ 339948 (-) True G108379
TU135541 other upstream 277025 395424 ~ 395979 (-) False AMCG00006232
TU135562 other upstream 361183 479582 ~ 546146 (-) False AMCG00006241
TU135628 other upstream 613042 731441 ~ 735410 (-) False AMCG00006245

Expression Profile