RNA id: TU135530


Basic Information

Item Value
RNA id TU135530
length 2830
RNA type TUCP
GC content 0.49
exon number 2
gene id G108379
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 333788 ~ 343011 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCCAATACAAATTTGACAAgtcaaaatgaagaaaactgaaggcaaaacgccccaagaacaagcaggaactaaagacactgcagtgcaggtctggcagagcagcaccagggaagaaacccagcatctggtgacgTCTATGGGTTCAAACTTCAGGccgtcattgactgcaaaggatttgccaccaagtattcaaactcacaatttaattcatgaatatGTTAGTTtgaccaaatacttttgagcccctaaaattgaggGGACCACcaataaaaatgggtgtaattcctacagcGTTCACCCAATGtgaatgtaactaccctcaaattaaagatgagtctacacttaaagcacatctttattgtttcctttcaaatctattgtggtgatgtagagccaaaatgatgacacttGTGTCACTGACAGCCATGCTGCcctgacactctgacacacagcaCTCTGCGGTACTAACAGATATTAAAGTGTATGTGCTTTGGATTGATATAGAGATGGATAATGTGTACAGTGCGGAGCAGCTCTCTGGCTGTGTGACCTGGCAGACCTGACTGCACACCGCCTTCCCTCCAGGAGACTTTGGGAACTGAGCTGGACAGAACCGGCCCGACCCActttgactgactgacacactgaacacaggcTTCAGTCCCTGTGGACAGGCCGCTCTCGGTCCCGCTGCCACCCTCACCGTCAGTGCGCTTGTGTCTCTGTGGCTCTGAGTGaagagagtgtgtctgtgtagggCCGGTCTGTgcgcagtcagtcagtcagtcagtgagggtgtctgcagtgctgcaacaataataattttatttagaaGTGCCTTTCAAAATACTCAAAATAAGGACAGTGTACAAAAACTCAGAACAACATCAGACAAACATACAATACAGGTTATAGAGCAGTAGAGGTGTTTGTgagtatgtgcgtgtgtgtcagcGTATGAGTGTGTACATATCACTGAGACTGAAAGTGAGACAGATTGAGACACGTGTGAAGACCGGGACGGAGAGTAGGGGATGAAGAGATTGTCTATGAGCGAGCCAGGCCATGGAGAAATTTAAACACTAACACAAGGACTTTAAACTGGGTTCTGGGAGCCCGTGGAGGTGTTTCAAGGTGGGGgagatgtgttcccagggtctggaCCGGGTGAGGAGCCCTGCTGCAGTCATACTGAAGCTTGCGGAGTAGAGACACAAAGAACAAGAGCATTACAGTAACCCAAACTGAATCCCAGCTAGCAGAGGTTCTGGACTTCCTTCATGGTGGATGAGTGCTGATCACAATGGCTTCagttttattgctgtttaaCCGCAGGTAGTTGGAGGCCATCCATGAGTTTATGTCATGAAGACATGAACTGGAGCAGACATAGGTAGTGTGGTGTGAAGGTAGATCTGGGTGCCATCAGCGTAACAATGGAGGAATTAGATGAAGAAGAGCAGAGGCCCAAGGACCGAGCCCTGAGGGACCTCACAGGATAAAGGAGCTGGGGTGGATGGAGATAAACGTCTGTCTGGTAGATCAGATTGGAGCCAGGAAAGGGCTGAGCCAGAGACACCAAGGACAGATTCCAAACGATTGAGAAGTTTTTATCATGGCAAACGGCGTCAAAGGCAGCTGGTAaatcgaggaggatgaggataTTCAGTCAGCTGTGATGAGAAGATCATTTAGACTTTAAGTAGCACTTCAGTACTTTGATTAGTATGGACACCAGACTGAAAGACCTCGAAGAGCTCGTTTGTGGACACATGTGAGTGAAGCTGAGGGGCAACCGTGTGCTCTGGTACTTCCACAAGGAAGGGGACACTGGAAATAGGCCGataattcctgagctcatcggggTTGAGACCAGGTCCTTAAGGACTGGCGTGATGGCAGCAGATTTCAGGATGGAAGAGACAGGTATCAAGAAGAGGGGAGAGAACAGGAAGGCATTTCTCTCTAGATTTAGACAGCAGCTCAGTCACAAAGTGCTCGTCGACAGGGGAGTGAAAACCACGAGGAGCAGAGCGATGGGGAGGAAGGACAGAGACAGCGCATGTGGGAGGAGTCTGGTTGATCAGAGGATGAACAAGATCAATTTTATTGTGAATGAAAGTGAGGAAATCATGACAGAGGGGGATGGAGAAAGTGGGAAAGACTCAGCGGGATGTTGGGGCTTTGTGATCGCAGAGAACAGAGATCTGGGGTTTCCTCGGTGGTGAGTGATTCAGTAAGTACAATAGGGGTTTTGTGCCGCAACCAGGGCTGATTTGTCGAGTTAGACGTGTTCCCTGTACACCAAGGCATGAACCAGCAAGCCGGTTCTGTTGGAGAGGCGCTCGAGCGATGACCAGTGGACCTTCATGGACCTCAGTTCAGGTGTGAACCAAGGGCCTGAGTGAGAGCAGGTAACTGTGTGGTGATTCCAGGGGCAAtagagtcagtgtgtgtgcagtgtgcactGGAGCCAGCTTTGTCCTCAGTGTGAGTCAGTGTCCtccgtgtgtgtcagtgtgctcagtgtgcaCTCTGTCCAGTGTCCtcagtgtctgtcagtgtgcgCTCTGCTCAGTGTCCTCAGCGAACagcctctctctcagtctgtaGTAGTCCCCTCTCATGTCCATCAGCTCCTGGTGAGAGCCTCGCTCCTTCACCCCCCCGCTGTCAATCAGGATGATCTGATCAGCCTTCTCCACTGTCTTCAGCCTGTGAGCCACGAGCAGCACCGTCTGAGAGACACAGCTGGACAGGGCCTTCTGGAtctacagacacagagacacagttactgcactgacactgagacacacagctGGACAGGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU135502 lncRNA downstream 58475 270756 ~ 278261 (-) True G108365
TU135447 lncRNA downstream 111595 85489 ~ 225141 (-) False G108324
TU135445 lncRNA downstream 111595 128725 ~ 225141 (-) False G108324
TU135452 lncRNA downstream 111595 128725 ~ 225141 (-) False G108324
TU135451 lncRNA downstream 111595 153232 ~ 225141 (-) False G108324
TU135507 lncRNA upstream 25330 365278 ~ 368624 (-) True G108366
TU135552 lncRNA upstream 95453 435401 ~ 435621 (-) True G108397
TU135561 lncRNA upstream 139634 479582 ~ 480415 (-) False AMCG00006241
TU135557 lncRNA upstream 163855 503803 ~ 562415 (-) True AMCG00006241
TU135606 lncRNA upstream 245594 585542 ~ 650826 (-) False G108427
AMCG00006227 mRNA downstream 15648 311224 ~ 321088 (-) True AMCG00006227
AMCG00006228 mRNA downstream 37599 296206 ~ 299137 (-) True AMCG00006228
AMCG00006229 mRNA downstream 46051 287691 ~ 290685 (-) True AMCG00006229
AMCG00006221 mRNA downstream 69855 263637 ~ 266881 (-) True AMCG00006221
AMCG00006222 mRNA downstream 74304 256337 ~ 262432 (-) True AMCG00006222
AMCG00006230 mRNA upstream 4827 344775 ~ 352314 (-) True AMCG00006230
AMCG00006232 mRNA upstream 53884 393832 ~ 397899 (-) True AMCG00006232
AMCG00006238 mRNA upstream 168221 508169 ~ 511193 (-) True AMCG00006238
AMCG00006241 mRNA upstream 189106 529054 ~ 532720 (-) False AMCG00006241
AMCG00006240 mRNA upstream 199251 539199 ~ 539936 (-) True AMCG00006240
TU135453 other downstream 111595 221271 ~ 225141 (-) True G108324
TU135541 other upstream 55476 395424 ~ 395979 (-) False AMCG00006232
TU135562 other upstream 139634 479582 ~ 546146 (-) False AMCG00006241
TU135628 other upstream 391493 731441 ~ 735410 (-) False AMCG00006245
TU135631 other upstream 397312 737260 ~ 740289 (-) False AMCG00006245
TU136000 other upstream 786614 1126562 ~ 1134690 (-) True G108708

Expression Profile