RNA id: TU135605


Basic Information

Item Value
RNA id TU135605
length 3266
lncRNA type read_through
GC content 0.40
exon number 5
gene id G108427
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 585542 ~ 712764 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tataattaatacaataacaaaataaaaaaaaaaaaaaaaaacacacacctttGGCTATATTCCGTGATCCCTGAAGCATTGTTTTATTACCCCTCCACAGTCAAAGTATCTCTTCACTTTACATAAAGAGGACACATAATTCCAAGACAAGACAGAACAGTTTTGTATATTATtgcaattgttattttgtaggattgtcaatttctgtaatatttatcTCAACGTAAGCAAGATGAAACCCCTGTCCACAGCTCAGCTCCTGGAGGTCCTCCTTCCCTGGAGAATTCTGTTTACCTGTGGCTCTGAACAACCTGTAAGAAACAGGATTACAGAAGTAAGTGGATTTATCTTCTGGGTGATGCCgtcagctacacacacacacacgcgcacacctccatttttctagtttttattttctcaatgtactctgaaattaaaagcatagaacaaaaacaaattggagataaatcatggaatctttaacaaaatgtaaccccttaagctgacaaacccctctggtccCTTAAAAAGGCACCAACtcctgtgcttctctttaatcccatgtgtactcctCACTGTTGTTGCTTACCAAGTGTTTGGCATCCCATGAGAGcggagactctcagctttctaaagATGTGAatcattctctgatgtgaaaaatgtgttttttatacacaaaatgggggggtggggaatgCTTAATCTGAgtatgaatacaaaatctcagaaaatattgacaataacattctggaaccagacgGTCTACTAATCAAAACGAGAGCAgacacgttttggtagaagcgaatgcgtttgagaatgaaacactagtagccaagagaataatctttcaaacgatgtgcgcattgtaggaatactgtgtcacttctatgcacaggagctgcgtgtaacactgacaaataatgcttaagagggtggagtaacagtatataattctgaaatggacattgttcagtttttggtaacaaactttttctttaacctctggcagtttattttcctttgtaccatttcaggtgattcactggacttgaactgcttacatttcaatacaaactggaaaaattggggtgttctaaaacttttgaccagtagtgtgtgtatatggcctcacagctcctgggatCCTGGTTTGTTTCCAGTgttgggtgtctgtctgtgtgcagcgggtctgttctccccgtgtctgtATGGCTTTCTCTGCGTGAAGCAGTTTCCTCTcacatcccaaagacaggcTGCAAATGCCGTCATTTTGGTATATAAACAGAAACGCTATCTTGCCCAGGTGTGGAGTTATGTATGATGCCATGCAAAGTAAGCTATGCGAGATATTGTTTTACATGCTATGTCTTCTGAAGGTTAGGCctcataaaacaaactttattaatgTCAATTTACTAATTGAaagtaatatactgtatttttaaattaaaatttataataagatacaatttcattttttacaacAGTTGTATGCTCCATGTCTGTGAAAGTGTGAAAAAGTCGTTTGAGGGTTATCATATAATATTATACttattagaatatatataatattatccATCCACTTGCCTATGTATTGTACAGATATGCAGGTATTGTGAAGACTCATTTAGGAGTGGCCTCacctttcaataaataatactatatcttaatacaggttttaaaataggttttatAACACGAAGATCAGTTCAAGCTGTACAGAACTACTAGAATAACCagttatttagtttaattttaaatttgcaaCTATTTATTGATGCCTGTATTTGTGCATGTGAAGTACAATTGTTATAAACTATAGGCCTACATACAGTATAAGTTAACTTTAATAAGTTACAGTAGGAAATTAAGCATGATAACTTCAGAACTAATCAaagtaattacaataatactgaATAATGCATAGTAAATACgggttcaaattaaattaagaggCAGAGCAAATTGgatcaggttaaaaaaaaaaaaccaaaaacacacttAATTATTAGTTAGTATAATGTTGAAAATCAAGAATTGACAGGTACGACAATTCatatttaactgaaattaaatctaGCCTACACTTAATCAgataatacagtaatattaaTGACAGCGTGTTAGTAAAATATAACTAACAATGCGTAAACATGTTTACAGttataaataaaagtttaaacaaTAAACACCTCTGTTGTATCTCCCCTTCCATGTGTTGCGTTATAGGCACTGTACTTCTGTCCCTGGACAATATGGCCACTGGAGTGAGCGAGTGCGTGCGtgcgtgagtgtgagtgagtgctgCCCTGTGATGGCCTGGTGTCCCATCCAGGTGAGCCCTGTGTCTGCCAGGTTGGGCTCTGGTTCACCAAAACCCTCTACAGGATAAAGCGGTGATTGATAATGGATGGagagatagatatatatttagaagGCTATGTGTCTCACAATGTCTGACTAAATCTCATTTTATCAGGTGACATTTTACTCAGGTTGGTCTGTTATAATTACtaacacaaatatgttttacctTAAGCGGTTGGCACCAGAATGCGccctgGATTTCTTCTTGTAGTAGACTCCCCCCGCAGCTGCAATGACAAGACCCAGCACCAGACCAGACGCCCCGATAATCACCTTGTTCCTGTCAGACCCGGGCATCGAGGACCCCATTTCACCTCTCTGGGCTGAGGAAAGCTGCCGTGCTCCACCTTGCAGGAGATGGTCTCCCCAGACTCTGGCGTGTACTCCAGGTGAGAGTGGATCTGATAGTACCAGTCTCCGTCGGACAGCTCCTCTGTGGACGTCACGTCCGAGCCCACGGTCCGCCCGTTTCTCAGCCAGGTCACCTTGATCGGTTTAGGGTAGAAGCCAAACACACTGCAGACCAGCATGGCCGGGTGCTTCGGACTGAAGGGCTTCTCAGACCGGAGCCGAATGTAGGGTTCAGCTGAAGACTGTCTTATCCAGTATGGTTTTGTAGTAGAGTCCAGCGTTGGGCTTGCAGTATGTATCCCGGCTAGGGAGGAGTCTTCCCCGCTCAGCTGGATCCTTGTTCAGTCTCTCTGCGTTCTTCACTCCCAGCTCGGTGTAGCCAATGTACTGGTTCAGAGTGCTGTTGTATCGCAGGAACTCCAGCTtgttaaaaatgtgtctgtCAATGTACTCCAGGCCATCCAGGCTCTTTGAGCTGTACCGACACTCCCCTTGCATATGGTACATATATGCATCTACAcggaaaaacacacatttcaaaa

Function

GO:

id name namespace
GO:0002376 immune system process biological_process

KEGG:

id description
ko04612 Antigen processing and presentation
ko05320 Autoimmune thyroid disease
ko05330 Allograft rejection

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU135557 lncRNA downstream 82950 503803 ~ 562415 (-) True AMCG00006241
TU135561 lncRNA downstream 164950 479582 ~ 480415 (-) False AMCG00006241
TU135552 lncRNA downstream 209744 435401 ~ 435621 (-) True G108397
TU135507 lncRNA downstream 276741 365278 ~ 368624 (-) True G108366
TU135528 lncRNA downstream 302354 336736 ~ 343011 (-) False G108379
TU135626 lncRNA upstream 13300 726064 ~ 730186 (-) False AMCG00006245
TU135635 lncRNA upstream 58347 771111 ~ 771337 (-) True G108451
TU135648 lncRNA upstream 98971 811735 ~ 811963 (-) True G108461
TU135676 lncRNA upstream 126091 838855 ~ 874493 (-) False AMCG00006247
TU135675 lncRNA upstream 129560 842324 ~ 874493 (-) True AMCG00006247
AMCG00006240 mRNA downstream 105429 539199 ~ 539936 (-) True AMCG00006240
AMCG00006241 mRNA downstream 112645 529054 ~ 532720 (-) False AMCG00006241
AMCG00006238 mRNA downstream 134172 508169 ~ 511193 (-) True AMCG00006238
AMCG00006232 mRNA downstream 247466 393832 ~ 397899 (-) True AMCG00006232
AMCG00006230 mRNA downstream 293051 344775 ~ 352314 (-) True AMCG00006230
AMCG00006245 mRNA upstream 13339 726103 ~ 748736 (-) True AMCG00006245
AMCG00006248 mRNA upstream 61710 774474 ~ 785585 (-) True AMCG00006248
AMCG00006247 mRNA upstream 156592 869356 ~ 874494 (-) False AMCG00006247
AMCG00006255 mRNA upstream 184214 896978 ~ 900845 (-) True AMCG00006255
AMCG00006259 mRNA upstream 330098 1042862 ~ 1047510 (-) True AMCG00006259
TU135562 other downstream 99219 479582 ~ 546146 (-) False AMCG00006241
TU135541 other downstream 249386 395424 ~ 395979 (-) False AMCG00006232
TU135530 other downstream 305417 336736 ~ 339948 (-) True G108379
TU135453 other downstream 420224 221271 ~ 225141 (-) True G108324
TU135628 other upstream 18677 731441 ~ 735410 (-) False AMCG00006245
TU135631 other upstream 24496 737260 ~ 740289 (-) False AMCG00006245
TU136000 other upstream 413798 1126562 ~ 1134690 (-) True G108708
TU136027 other upstream 502461 1215225 ~ 1216184 (-) False AMCG00006274
TU136062 other upstream 624423 1337187 ~ 1341445 (-) True AMCG00006277

Expression Profile