RNA id: TU135606


Basic Information

Item Value
RNA id TU135606
length 446
lncRNA type inter_gene
GC content 0.33
exon number 2
gene id G108427
representative False

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 585542 ~ 712764 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

NNNttttttttttttttttactatttttaaaataaagcagaacatTGGAAAAGGCCACATTGTTACTATTTTACATAGGTTTCAATGATGTTCACCATATTCctatatatttgattaatttatttgtataattaatagctaaaacaaagaaaaaaaaaaaaaacacacacctttGGCTATATTCCGTGATCCCTGAAGCATTGTTTTATTACCCCTCCACAGTCAAAGTATCTCTTCACTTTACATAAAGAGGACACATAATTCCAAGACAAGACAGAACAGTTTTGTATATTATtgcaattgttattttgtaggattgtcaatttctgtaatatttatcTCAACGTAAGCAAGATGAAACCCCTGTCCACAGCTCAGCTCCTGGAGGTCCTCCTTCCCTGGAGAATTCTGTTTACCTGTGGCTCTGAACAACCTGTTCCTGAAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU135557 lncRNA downstream 23127 503803 ~ 562415 (-) True AMCG00006241
TU135561 lncRNA downstream 105127 479582 ~ 480415 (-) False AMCG00006241
TU135552 lncRNA downstream 149921 435401 ~ 435621 (-) True G108397
TU135507 lncRNA downstream 216918 365278 ~ 368624 (-) True G108366
TU135526 lncRNA downstream 242531 333788 ~ 343011 (-) False G108379
TU135624 lncRNA upstream 50653 701479 ~ 701940 (-) False AMCG00006243
TU135626 lncRNA upstream 75238 726064 ~ 730186 (-) False AMCG00006245
TU135635 lncRNA upstream 120285 771111 ~ 771337 (-) True G108451
TU135648 lncRNA upstream 160909 811735 ~ 811963 (-) True G108461
TU135676 lncRNA upstream 188029 838855 ~ 874493 (-) False AMCG00006247
AMCG00006240 mRNA downstream 45606 539199 ~ 539936 (-) True AMCG00006240
AMCG00006241 mRNA downstream 52822 529054 ~ 532720 (-) False AMCG00006241
AMCG00006238 mRNA downstream 74349 508169 ~ 511193 (-) True AMCG00006238
AMCG00006232 mRNA downstream 187643 393832 ~ 397899 (-) True AMCG00006232
AMCG00006230 mRNA downstream 233228 344775 ~ 352314 (-) True AMCG00006230
AMCG00006242 mRNA upstream 14760 665586 ~ 675760 (-) True AMCG00006242
AMCG00006239 mRNA upstream 25758 676584 ~ 686559 (-) True AMCG00006239
AMCG00006243 mRNA upstream 49709 700535 ~ 701901 (-) True AMCG00006243
AMCG00006244 mRNA upstream 61006 711832 ~ 720393 (-) True AMCG00006244
AMCG00006245 mRNA upstream 75277 726103 ~ 748736 (-) True AMCG00006245
TU135562 other downstream 39396 479582 ~ 546146 (-) False AMCG00006241
TU135541 other downstream 189563 395424 ~ 395979 (-) False AMCG00006232
TU135530 other downstream 245594 336736 ~ 339948 (-) True G108379
TU135453 other downstream 360401 221271 ~ 225141 (-) True G108324
TU135628 other upstream 80615 731441 ~ 735410 (-) False AMCG00006245
TU135631 other upstream 86434 737260 ~ 740289 (-) False AMCG00006245
TU136000 other upstream 475736 1126562 ~ 1134690 (-) True G108708
TU136027 other upstream 564399 1215225 ~ 1216184 (-) False AMCG00006274
TU136062 other upstream 686361 1337187 ~ 1341445 (-) True AMCG00006277

Expression Profile