RNA id: TU135648


Basic Information

Item Value
RNA id TU135648
length 229
lncRNA type inter_gene
GC content 0.52
exon number 1
gene id G108461
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 811735 ~ 811963 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCAGATAAGAGAGGCTCTGCAGGACAAGCAGGACAGAGACCCGTCTCACAGACACTCTGCCTGCTGTGCATCTCCCTTTCCCCTCTCCGCCGCTCACAGCTGAACGATACTCTGACTCTTACACAGAGCGCTCAGCTTCTGACGCTGATGGCAAGACCGGGCCTGGCTCCGAGCCTGAGGAAAGCCATGAGGTAAttcaaactgatttaatttctaTACTGTGAAATGT

Function

GO:

id name namespace
GO:0017001 antibiotic catabolic process biological_process
GO:0019541 propionate metabolic process biological_process
GO:0019543 propionate catabolic process biological_process
GO:0019626 short-chain fatty acid catabolic process biological_process
GO:0046459 short-chain fatty acid metabolic process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU135635 lncRNA downstream 40398 771111 ~ 771337 (-) True G108451
TU135626 lncRNA downstream 81549 726064 ~ 730186 (-) False AMCG00006245
TU135605 lncRNA downstream 98971 645365 ~ 712764 (-) True G108427
TU135624 lncRNA downstream 109795 701479 ~ 701940 (-) False AMCG00006243
TU135606 lncRNA downstream 160909 585542 ~ 650826 (-) False G108427
TU135676 lncRNA upstream 26892 838855 ~ 874493 (-) False AMCG00006247
TU135675 lncRNA upstream 30361 842324 ~ 874493 (-) True AMCG00006247
TU135684 lncRNA upstream 40321 852284 ~ 855672 (-) True G108478
TU135682 lncRNA upstream 42396 854359 ~ 855672 (-) False G108478
TU135687 lncRNA upstream 45831 857794 ~ 858315 (-) True G108480
AMCG00006248 mRNA downstream 26150 774474 ~ 785585 (-) True AMCG00006248
AMCG00006245 mRNA downstream 62999 726103 ~ 748736 (-) True AMCG00006245
AMCG00006244 mRNA downstream 91342 711832 ~ 720393 (-) True AMCG00006244
AMCG00006243 mRNA downstream 109834 700535 ~ 701901 (-) True AMCG00006243
AMCG00006239 mRNA downstream 125176 676584 ~ 686559 (-) True AMCG00006239
AMCG00006247 mRNA upstream 57393 869356 ~ 874494 (-) False AMCG00006247
AMCG00006255 mRNA upstream 85015 896978 ~ 900845 (-) True AMCG00006255
AMCG00006259 mRNA upstream 230899 1042862 ~ 1047510 (-) True AMCG00006259
AMCG00006260 mRNA upstream 236215 1048178 ~ 1049728 (-) True AMCG00006260
AMCG00006258 mRNA upstream 256091 1068054 ~ 1073294 (-) True AMCG00006258
TU135631 other downstream 71446 737260 ~ 740289 (-) False AMCG00006245
TU135628 other downstream 76325 731441 ~ 735410 (-) False AMCG00006245
TU135562 other downstream 265589 479582 ~ 546146 (-) False AMCG00006241
TU135541 other downstream 415756 395424 ~ 395979 (-) False AMCG00006232
TU135530 other downstream 471787 336736 ~ 339948 (-) True G108379
TU136000 other upstream 314599 1126562 ~ 1134690 (-) True G108708
TU136027 other upstream 403262 1215225 ~ 1216184 (-) False AMCG00006274
TU136062 other upstream 525224 1337187 ~ 1341445 (-) True AMCG00006277
TU136064 other upstream 532553 1344516 ~ 1623374 (-) False AMCG00006292
TU136068 other upstream 538522 1350485 ~ 1352941 (-) False G108755

Expression Profile