RNA id: TU135693


Basic Information

Item Value
RNA id TU135693
length 614
lncRNA type inter_gene
GC content 0.54
exon number 3
gene id G108484
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 889073 ~ 889802 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CACAGACTCACTACAGCCCCACAGTGGACAGTGTCCACAGACTCACTACAGCCCCACAGTGGACAGTGTCCACAGACTCACTACAGCCCCACAGTGGACAGTGTCCAGAGACTCACTACAGAAACAACACACTGCACTTCAAACGTCACTTCAAATCCGGGCGGCTCGACTGAATCACAATATTGATCAATGATGAAGCAGCGTCGGTGTGCGCGGAGCGGCCAGGCCCACAGTACCGGTATGAGGACCACAGGTACAGACTTACGGTCACTcagcgctgctgctgctgctgctgttgttacaGTTTATTCCAGTTTGCGCCGCCGTGTCGCAGTCTGTCTCCTCCACACTTCCGCGTCTCTCCGCACCGCTGTCCctccgtctgtctctctctctttcttcctggCGTTGTTTTTTCCAGGGAATTTCAAAcgtgtgctttttaaaaaacaaaactaaaaaaactaaacaaaaaataatataaacaaagtCTGGCGTCAGCGCCTCTCGCTGGCGGCCATTTTTCCGCCGGACGTGCCCAGCGCGTCACTTCCTGTATGAGCAGCGCGGGCGGCGCTCACAGCGCGGTCTGGCGGCGGGGAGAGAAATGCGCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU135676 lncRNA downstream 14580 838855 ~ 874493 (-) False AMCG00006247
TU135675 lncRNA downstream 14580 842324 ~ 874493 (-) True AMCG00006247
TU135674 lncRNA downstream 14580 869277 ~ 874493 (-) False AMCG00006247
TU135687 lncRNA downstream 30758 857794 ~ 858315 (-) True G108480
TU135684 lncRNA downstream 33401 852284 ~ 855672 (-) True G108478
TU135702 lncRNA upstream 18088 907890 ~ 909028 (-) True G108491
TU135930 lncRNA upstream 43713 933515 ~ 933825 (-) True G108655
TU135942 lncRNA upstream 63490 953292 ~ 958678 (-) True G108664
TU135972 lncRNA upstream 150416 1040218 ~ 1098717 (-) False G108689
TU135975 lncRNA upstream 203062 1092864 ~ 1101292 (-) False G108689
AMCG00006247 mRNA downstream 14579 869356 ~ 874494 (-) False AMCG00006247
AMCG00006248 mRNA downstream 103488 774474 ~ 785585 (-) True AMCG00006248
AMCG00006245 mRNA downstream 140337 726103 ~ 748736 (-) True AMCG00006245
AMCG00006244 mRNA downstream 168680 711832 ~ 720393 (-) True AMCG00006244
AMCG00006243 mRNA downstream 187172 700535 ~ 701901 (-) True AMCG00006243
AMCG00006255 mRNA upstream 7176 896978 ~ 900845 (-) True AMCG00006255
AMCG00006259 mRNA upstream 153060 1042862 ~ 1047510 (-) True AMCG00006259
AMCG00006260 mRNA upstream 158376 1048178 ~ 1049728 (-) True AMCG00006260
AMCG00006258 mRNA upstream 178252 1068054 ~ 1073294 (-) True AMCG00006258
AMCG00006266 mRNA upstream 245132 1134934 ~ 1137945 (-) True AMCG00006266
TU135631 other downstream 148784 737260 ~ 740289 (-) False AMCG00006245
TU135628 other downstream 153663 731441 ~ 735410 (-) False AMCG00006245
TU135562 other downstream 342927 479582 ~ 546146 (-) False AMCG00006241
TU135541 other downstream 493094 395424 ~ 395979 (-) False AMCG00006232
TU135530 other downstream 549125 336736 ~ 339948 (-) True G108379
TU136000 other upstream 236760 1126562 ~ 1134690 (-) True G108708
TU136027 other upstream 325423 1215225 ~ 1216184 (-) False AMCG00006274
TU136062 other upstream 447385 1337187 ~ 1341445 (-) True AMCG00006277
TU136064 other upstream 454714 1344516 ~ 1623374 (-) False AMCG00006292
TU136068 other upstream 460683 1350485 ~ 1352941 (-) False G108755

Expression Profile