RNA id: TU135702


Basic Information

Item Value
RNA id TU135702
length 1015
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G108491
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 907890 ~ 909028 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gagagagtgacacAGTGCAAGCCTGCGctacatgaacacacacacacggacagagGTGTCACATTTTATTGAGCATCAACAGCATCACCAGCACAGAGCagtgttttgattaaattacacacacacaatcactatctctctctctcacacacacatctatattctctctctcacacactcactcagcacaggaatgtctctctctccacccccgCACGTCTCTCAGAAGTTGGGCTTGTGTTTCTTCACCTCCACCATGAGGTGGTGCAGGTTGATGAGTTCGGAGCGCACCGCCAGGCCCCGGTAGGGTGGCTGGGACAGAACCTTGTGGAACCCATGGTAGTACTGGATCAGCTGCGTCAGAGCTCCCTGAGAGAGGTGTGTAGAAGTCAGTGTGTACAGTAAGTCTATATCAATCAGAGTCTCGGTATGCACAGTGAGTGCAGTATATAAAGAGTGTAAGGTATATACAGTGTGCGCAGTAAATACAGTGcacagtatatacagtgttgCAGTAAATAGTGTGTGCTGTATATAAAGGGCGTAAGGTACATACAGTGTGCAGTAAATAGTATACAGTATAGACAGTGTGCAGTAAATACAGTGTgcagtatatacagtgtgtgcagtaaatacagtgtgcagtatatacagtatgcagTAAATAGTGTGCAGTAAATAAAGGACTTACAGTAAATAGGGTGTGCAGTAAATACAGTGTGCAGTATATACATAGTGACCAGATGTCCGCCTGTCAAGCACTTGTCTGCGTCTCACAACAGTTACACAATGTCCCGCATTATGAGTTTAAGCATAAGCATGATAGCGACGTTATACGGATGAacttcattcatatatatatttatatatatatcagcattATCAGATATATTTATCAgcattaattatgtaattattctgAACGCTGTGCTTTGCATGTCTGTGTTGGTGTAAAAGTCTTATCAACCGTCTCATTACaatatgtaacacaatttttggtCCTgagtagtaagtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU135693 lncRNA downstream 18088 889073 ~ 889802 (-) True G108484
TU135675 lncRNA downstream 33397 842324 ~ 874493 (-) True AMCG00006247
TU135930 lncRNA upstream 24487 933515 ~ 933825 (-) True G108655
TU135942 lncRNA upstream 44264 953292 ~ 958678 (-) True G108664
TU135972 lncRNA upstream 131190 1040218 ~ 1098717 (-) False G108689
TU135975 lncRNA upstream 183836 1092864 ~ 1101292 (-) False G108689
TU135974 lncRNA upstream 185696 1094724 ~ 1098717 (-) True G108689
AMCG00006255 mRNA downstream 7045 896978 ~ 900845 (-) True AMCG00006255
AMCG00006247 mRNA downstream 33396 869356 ~ 874494 (-) False AMCG00006247
AMCG00006248 mRNA downstream 122305 774474 ~ 785585 (-) True AMCG00006248
AMCG00006245 mRNA downstream 159154 726103 ~ 748736 (-) True AMCG00006245
AMCG00006244 mRNA downstream 187497 711832 ~ 720393 (-) True AMCG00006244
AMCG00006259 mRNA upstream 133834 1042862 ~ 1047510 (-) True AMCG00006259
AMCG00006260 mRNA upstream 139150 1048178 ~ 1049728 (-) True AMCG00006260
AMCG00006258 mRNA upstream 159026 1068054 ~ 1073294 (-) True AMCG00006258
AMCG00006266 mRNA upstream 225906 1134934 ~ 1137945 (-) True AMCG00006266
AMCG00006265 mRNA upstream 247699 1156727 ~ 1160200 (-) True AMCG00006265
TU135631 other downstream 167601 737260 ~ 740289 (-) False AMCG00006245
TU135628 other downstream 172480 731441 ~ 735410 (-) False AMCG00006245
TU135562 other downstream 361744 479582 ~ 546146 (-) False AMCG00006241
TU135541 other downstream 511911 395424 ~ 395979 (-) False AMCG00006232
TU135530 other downstream 567942 336736 ~ 339948 (-) True G108379
TU136000 other upstream 217534 1126562 ~ 1134690 (-) True G108708
TU136027 other upstream 306197 1215225 ~ 1216184 (-) False AMCG00006274
TU136062 other upstream 428159 1337187 ~ 1341445 (-) True AMCG00006277
TU136064 other upstream 435488 1344516 ~ 1623374 (-) False AMCG00006292
TU136068 other upstream 441457 1350485 ~ 1352941 (-) False G108755

Expression Profile