RNA id: TU135752


Basic Information

Item Value
RNA id TU135752
length 2877
lncRNA type inter_gene
GC content 0.51
exon number 3
gene id G108519
representative False

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 1162864 ~ 1193441 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CATCACTGAACCGCCAGCCCCCCACAGTGCACACCCACAGCCCCGCACCGCACTGtgcgctctctcgctctctccgcTGTGGTACGGAGTTCATTACTGAaacactctctctgtctgtcttcccaGCTTTGCATATTACTGAACAAAGGGGTGTGTCGTCTGTCTCTATCTGATCCTGTTGTTTATTAGTCAGAGATTTCCTTCTGTCCTGTCCTGTAGCACatgagagagaatgagagacaTCTTGGAGATCCTTCGGTAATAAACACAACAGGacagcagacagagagagtagATTGGGCCGCCTGGCCCTGTTTACACGCAGCACAGGAGCCTCTGTGTGTCTGGGTTTAATAGAGGCGGGGCTCGTTGTCACTCCAGACTTGCCCTTAATTGGACTGATGAAGACTGATTCAGCCGATCTCGGCAGGTGTGAGACGGGACTGCCATGGAAAGCAGGCAGCAGACAGGGGACCTGCAGGACCAGTAGATGAACTGGGCTGCAAAGCACATCTGACCTGACCCTCACTGGAACTGGTAGAGGCAGACAGAGcgacagagagaaagggagagactGCAGgagtaaaaaaacacacacagagagccaGAGAGCGAGTGGTCAGTTCACAGCGACTGTGTCCGTCTCCCCTCGGGTATCTACCACAGCGTCTGGTTCAGGAATGCCCATTTAATGgaaaaattaaatttacaatcaatgctaacattcatacatacatacatacataccccCCGACACACAGATTTAAACAACTGAATAATTCATACTAACGAAGAGAAGCAGTAAGCTTGAGCACAGCCAACCGGTCACCAGACACTACAGAGCCGTGCTGGGAGGGCACAGCTAGTCAGTCCTGCAGGTGTTACAGGTCCCTCTCTTTACATCCCTGCACTAACACTGGTTGAAGTTCAGCAATTAAAACTGCCCAATTAAGGAAGTGAGTTCTGGTGTGTGTCCCTGTCCACACTGCCGTAAGACTTCATAAAAGTAGTCATCATAGTTAGAGAAACGGAAGATTAGCATCTGAGCGGCCACAGCTTCCCGTGTCTCACAGATCTGAGCCCCAGAGCCGGGCCCCACGGCACCACAGCCACAGAGCCGGGCCCCAGAGCTGAGCTCCACGGAGCTGCTTCTGGCTCTGCAAACACATCACAGCACGGCAGCAGTCAATACAGATCGGCACAGCACCAGTCAATACATGCGGTACCCCTCCACTCTCACAGCACAGCGATTAGGGGAAGAGCGGCTGCATTTAATACTGTTCAGTTATTCAATACCTGGGGCTCTTTTCATTCGACTTCCTGCCGACGGCCGGCTGTTTGACCATCCCAACAACCACAGTCCTCACCACAAAGACAACGATGGCTCTGAGCAGCTGGGCTGGATGCAAAGCTGGCGAGGGTCTCTGTCCAGAACACACAAGACCCGCTTAACAACCCTAACAGCTGTGTGACCAGCATTGCACCGCAGCGCCAGAGACAGCGCCCCCTCACTCCGCCCAGGCACCACGGGGAACTGCAGCCCACCGCCACAATAATgatcatcataatattaataacgaCTTAATTAAGCTTGGCTTGGACACACCCAACACAGAGTCACCCACAGAGGATTAGTGACAGCCTGTCCGGTGAACGCAGCACCTCAGACAACTCTGTTCATCGGCCACATGGGGGGAACAACAGTATCACAGTCAGTCAACGAAGTAAGAGATCCTACtccattatgatgatgataataatacagaataagCTCACTCTCTGCCTGGAGCGGAGCAAGAGTCACCACAGGGTGTCAATACTGATGTCTGAGGCTATACCAGCAGGGCCCTGAGGAACGCCTGCGTGTGTCTGTATTAATGTGCGTCTCTGgggacctgtgtgtgtgtgtgtaggggtgtGTGTCAGACAGCCCAGACTGTGCAAGGATGTGTATgcaagtgtgagtgtgtaaatGTAGGTGTGAGTTtgagtgtgtaggtgtgtggCCAACAGCccagactgtgtgtgtatgtgtgtaggggtgtgtgtgtcaagacagaacagagagagtgtgagagtgtgtgtgtgtgtgtgtgtgtgtgggtgtgtgtgtcagtggagTCTCTGGTACAAAAGTGACACCAGATCGGCAGccaggtttacattttttctttatttgatataaaactcagaataaacaggaggagagggaagaggggagagagagaggacaggggaGCGGAGGGCAGGGGCTCTgtatctctgcctgtctgtctccatGTGTCCATTTATACAACTATCTATCCATCTACAGATACAGGTATGGATCTGCTATTCTACACGTCTGTGGGGTCTACATACACACCCGTCTGTCTACACAGCACGTACAGCGTCAATTAAACagcactgtctgtctgtctctctatctctacACAAGATTAATTATAAACACTACTTAAGGATAAGAGTAACTCAGACGATCTATAACTGACTGTGCGTCTCTTTaaactctccctccctctctcttgatCTAAATGAAAAACTAGTTAAGACAGacagactggacactacagtacactgacactgactggacacaagggagagagacagtgagaaagagagacacagacagtcTCCAAAATAGACTTTTCAGTTCTTAAATGAGGTTCAGTCCCCAGGCTCCGGGCAGGATGTGGCCCCAGGGCCTAGATGCTTCCTATCAGGCCTGGCCCCGCCTCGGCCCCAGTGTCTGGGCAGGCCTCCAAGCGGGCCAGCCGGCTCTGCTCCAGGGCGATGGCCTCGGCCGAGTGCTTACACTTCTCAGAGCCGCACTGGCAGGTGAAATATTTACTCTTGATGTCCCAGAACCGATCGCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU135746 lncRNA upstream 91092 1071294 ~ 1071772 (+) True G108516
TU135744 lncRNA upstream 92093 1070327 ~ 1070771 (+) True G108515
TU135742 lncRNA upstream 95139 1067036 ~ 1067725 (+) True G108513
TU135710 lncRNA upstream 229039 933515 ~ 933825 (+) True G108496
TU135441 lncRNA upstream 372031 789976 ~ 790833 (+) True G108322
TU135776 lncRNA downstream 7853 1201294 ~ 1201681 (+) True G108540
TU135793 lncRNA downstream 24438 1217879 ~ 1221424 (+) True G108555
TU135807 lncRNA downstream 104816 1298257 ~ 1298726 (+) False AMCG00006275
TU135825 lncRNA downstream 150111 1343552 ~ 1343755 (+) True G108580
TU135830 lncRNA downstream 156610 1350051 ~ 1397427 (+) True G108584
AMCG00006263 mRNA upstream 14951 1143777 ~ 1147913 (+) True AMCG00006263
AMCG00006264 mRNA upstream 55148 1102780 ~ 1107716 (+) True AMCG00006264
AMCG00006262 mRNA upstream 64093 1089591 ~ 1098771 (+) True AMCG00006262
AMCG00006261 mRNA upstream 76877 1077293 ~ 1085987 (+) True AMCG00006261
AMCG00006257 mRNA upstream 123584 1026203 ~ 1039280 (+) True AMCG00006257
AMCG00006270 mRNA downstream 6380 1199821 ~ 1213094 (+) True AMCG00006270
AMCG00006269 mRNA downstream 72091 1265532 ~ 1272008 (+) True AMCG00006269
AMCG00006276 mRNA downstream 85019 1278460 ~ 1284012 (+) False AMCG00006276
AMCG00006275 mRNA downstream 93388 1286829 ~ 1315558 (+) True AMCG00006275
AMCG00006282 mRNA downstream 167169 1360610 ~ 1415163 (+) True AMCG00006282
TU135722 other upstream 172042 985873 ~ 990822 (+) False AMCG00006256
TU135656 other upstream 314092 846561 ~ 848772 (+) False AMCG00006246
TU135436 other upstream 371802 774809 ~ 791062 (+) False G108319
TU135437 other upstream 371802 774809 ~ 791062 (+) True G108319
TU135365 other upstream 728959 429763 ~ 433905 (+) True AMCG00006231
TU135810 other downstream 87260 1280701 ~ 1286052 (+) True AMCG00006276
TU135836 other downstream 156942 1350383 ~ 1429987 (+) True G108585
TU135921 other downstream 542491 1735932 ~ 1739267 (+) True AMCG00006294
TU135896 other downstream 615116 1808557 ~ 1812675 (+) False G108626
TU136837 other downstream 2167913 3361354 ~ 3365565 (+) False G109309

Expression Profile