RNA id: TU135850


Basic Information

Item Value
RNA id TU135850
length 1419
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id G108595
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 1473372 ~ 1474967 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tttttttcatttttatatttattattatatcattataataataagacacTTCTCTGCTCATACATTGCTCCcttgaacttaaaaaaaaaaaaaaaaaaaaaaaagacgggGGGGGAATGTAAGCTGGGACTTATATACATACGTGTGTCTGTATGCATgtgcacacatacaaatacacatacacaggtGTGTTGGTGTTTGCATGTGAGAGAAAAATAGTGGATATACATAGAAAGATACCGTCTGCAGCACTTCACAGAAACTGAGCAGCTTTTAAAAACGCACGCATACACGCACACTCAATGAAACTTGAGCCGCGCCCAAGACTAACTGAAAGCTTTGAATCTGAAAATCCCTTGCCAACTTATTCccaaacaaaagtgtgtgtgtgtgtgtgtgtcagtacacaccatggatatttaaaaatgaaactccGCTTTATTCAGAAACTAAACCatcactgaaacagaaacccGCATTTTTCTCTACTCTCCCTCCGTCCCCGCACACGACCGCCTCTCCGAGCCCGTTTCCCTGGCTGTGTGTATGCgagcgtctgtctgtctgggttgAGAGCAGAAGCAATGCAACAATTCCTGATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaaaaaaaaaaaaaaacccacacacaccacactgacTCTGGAGTTCAAAAAACCGCAAAGTACATCTGAAACGGACGCGGAAGATTCCTCCCGTCGTACGACAATGACCGACCTAGAGCCTATTCCTCCACCATGGTGATCACAAAGCAGGAGGAGCGGAGCCAGCATCGCCCACAGTGCCTCAGCGTCGGAGAAGTTCAATACTTCACAGACCGCCCCGggcctcctgctgctgctctgctCCTCGGCTTTTGTGCTTGCCGCTTCTCTGGCACTTGTGTTCTCTCACAGGCTGCTGCTATACAACCCCGGCTCCGATAGAGGAaacgcacagagagacagaggaggaaagaaaatgtgaacgGACACGGGCAGAGAGGGAGGTACCTTTgggaagagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatatatgtatatatacacatagatGAAGGCcaggaaagagggagggagcaaGAGTGAGTGTACAACTCCGTATCTATGAGGATGTATAATGATGGGCTAATATGCGGGGTCGGGGGGGGCAGGGTTTGTGGAGATCGGGGAGCTGGGACTCCGATCGTTCTTCAGTTATGGTAATTCCACTCGTACGAATGCatgttcttgtttcttttaaaagcgTGGTTGGTTCAGGACAGGGAGCGGACGCTTCTCTTCTGGAGCGCTCACTTCCTGTTCTTGGGAGAGGGCCAGTTGTTACCGTTGGCACTGCCGCCTCCATTTCCACGGCGATCTCCGCGGTTTCcacctcctccg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU135830 lncRNA upstream 75945 1350051 ~ 1397427 (+) True G108584
TU135825 lncRNA upstream 129617 1343552 ~ 1343755 (+) True G108580
TU135807 lncRNA upstream 174646 1298257 ~ 1298726 (+) False AMCG00006275
TU135793 lncRNA upstream 251948 1217879 ~ 1221424 (+) True G108555
TU135776 lncRNA upstream 271691 1201294 ~ 1201681 (+) True G108540
TU135857 lncRNA downstream 12345 1487312 ~ 1487870 (+) True G108602
TU135860 lncRNA downstream 19397 1494364 ~ 1495708 (+) True G108605
TU135895 lncRNA downstream 162430 1637397 ~ 1814610 (+) True G108626
TU135905 lncRNA downstream 176088 1651055 ~ 1651459 (+) True G108632
TU135890 lncRNA downstream 201699 1676666 ~ 1678507 (+) False G108626
AMCG00006281 mRNA upstream 39506 1424407 ~ 1433866 (+) True AMCG00006281
AMCG00006282 mRNA upstream 58209 1360610 ~ 1415163 (+) True AMCG00006282
AMCG00006275 mRNA upstream 157814 1286829 ~ 1315558 (+) True AMCG00006275
AMCG00006276 mRNA upstream 189360 1278460 ~ 1284012 (+) False AMCG00006276
AMCG00006269 mRNA upstream 201364 1265532 ~ 1272008 (+) True AMCG00006269
AMCG00006287 mRNA downstream 61940 1536907 ~ 1545850 (+) True AMCG00006287
AMCG00006286 mRNA downstream 98161 1573128 ~ 1574818 (+) True AMCG00006286
AMCG00006288 mRNA downstream 163092 1638059 ~ 1647130 (+) True AMCG00006288
AMCG00006289 mRNA downstream 185671 1660638 ~ 1661843 (+) True AMCG00006289
AMCG00006293 mRNA downstream 240516 1715483 ~ 1721110 (+) True AMCG00006293
TU135836 other upstream 43385 1350383 ~ 1429987 (+) True G108585
TU135810 other upstream 187320 1280701 ~ 1286052 (+) True AMCG00006276
TU135722 other upstream 482550 985873 ~ 990822 (+) False AMCG00006256
TU135656 other upstream 624600 846561 ~ 848772 (+) False AMCG00006246
TU135436 other upstream 682310 774809 ~ 791062 (+) False G108319
TU135921 other downstream 260965 1735932 ~ 1739267 (+) True AMCG00006294
TU135896 other downstream 333590 1808557 ~ 1812675 (+) False G108626
TU136837 other downstream 1886387 3361354 ~ 3365565 (+) False G109309
TU136897 other downstream 2028214 3503181 ~ 3506679 (+) True G109362
TU136948 other downstream 2095072 3570039 ~ 3573709 (+) False AMCG00006379

Expression Profile