RNA id: TU135857


Basic Information

Item Value
RNA id TU135857
length 393
lncRNA type inter_gene
GC content 0.54
exon number 2
gene id G108602
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 1487312 ~ 1487870 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTTGGGTCGGCAGATTCCTGCTTGCTTGCCCATCCTGTTCCGTCTTTGGGCACCAGCGAGACGTTCGGATCGTTCCCTTTGTTCTCAGCTTTCAGACTGGGCAGGTTGGCAGGGGGACCGACGGGTTTCTGGGTCTCTAGAGTCTTTCCTTTGTAGGTATCAAACAGGTTGAGGGACGCATACTTGGATTTTCCATCCTTCCCCTTTGCCGTTTGCCCAGACCGCTCTGTCATTGCGCTGGAGGGTCATTGAGTACGGTGAGCCCTGAGACTGCCAGGGGAGACTGCCTttgtctgagagagaggggggggaagagGAGGTTAAAACACTGAGCACAGTGCAACCCATTAACACTGCATGGAGAGAGAGTGGACACCGGACACTTCAGTAGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU135850 lncRNA upstream 12345 1473372 ~ 1474967 (+) True G108595
TU135830 lncRNA upstream 89885 1350051 ~ 1397427 (+) True G108584
TU135825 lncRNA upstream 143557 1343552 ~ 1343755 (+) True G108580
TU135807 lncRNA upstream 188586 1298257 ~ 1298726 (+) False AMCG00006275
TU135793 lncRNA upstream 265888 1217879 ~ 1221424 (+) True G108555
TU135860 lncRNA downstream 6494 1494364 ~ 1495708 (+) True G108605
TU135895 lncRNA downstream 149527 1637397 ~ 1814610 (+) True G108626
TU135905 lncRNA downstream 163185 1651055 ~ 1651459 (+) True G108632
TU135890 lncRNA downstream 188796 1676666 ~ 1678507 (+) False G108626
TU135894 lncRNA downstream 320687 1808557 ~ 1814610 (+) False G108626
AMCG00006281 mRNA upstream 53446 1424407 ~ 1433866 (+) True AMCG00006281
AMCG00006282 mRNA upstream 72149 1360610 ~ 1415163 (+) True AMCG00006282
AMCG00006275 mRNA upstream 171754 1286829 ~ 1315558 (+) True AMCG00006275
AMCG00006276 mRNA upstream 203300 1278460 ~ 1284012 (+) False AMCG00006276
AMCG00006269 mRNA upstream 215304 1265532 ~ 1272008 (+) True AMCG00006269
AMCG00006287 mRNA downstream 49037 1536907 ~ 1545850 (+) True AMCG00006287
AMCG00006286 mRNA downstream 85258 1573128 ~ 1574818 (+) True AMCG00006286
AMCG00006288 mRNA downstream 150189 1638059 ~ 1647130 (+) True AMCG00006288
AMCG00006289 mRNA downstream 172768 1660638 ~ 1661843 (+) True AMCG00006289
AMCG00006293 mRNA downstream 227613 1715483 ~ 1721110 (+) True AMCG00006293
TU135836 other upstream 57325 1350383 ~ 1429987 (+) True G108585
TU135810 other upstream 201260 1280701 ~ 1286052 (+) True AMCG00006276
TU135722 other upstream 496490 985873 ~ 990822 (+) False AMCG00006256
TU135656 other upstream 638540 846561 ~ 848772 (+) False AMCG00006246
TU135437 other upstream 696250 774809 ~ 791062 (+) True G108319
TU135921 other downstream 248062 1735932 ~ 1739267 (+) True AMCG00006294
TU135896 other downstream 320687 1808557 ~ 1812675 (+) False G108626
TU136837 other downstream 1873484 3361354 ~ 3365565 (+) False G109309
TU136897 other downstream 2015311 3503181 ~ 3506679 (+) True G109362
TU136948 other downstream 2082169 3570039 ~ 3573709 (+) False AMCG00006379

Expression Profile