RNA id: TU135890


Basic Information

Item Value
RNA id TU135890
length 1724
lncRNA type inter_gene
GC content 0.50
exon number 2
gene id G108626
representative False

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 1637397 ~ 1814610 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aactttttaaaaagaacttTATTGAAGAGTTTAAGACACCCCATATTTACACAAAAAGTACAGTGTAAGAGTACACAAGATCCAGATATATTGCTATAGATACTAGCAGATCTATATACAGTCATAGTGGAAAGCGGCCCCCAGCACTTCACTTTGCTCCCTTGATGTATAAAACGGTCTTCAGAAATGGAGGGGGGGGNNNNNNNNNNaaaaaaaaaaagagctacTGGAGTGGATGTGCCAGGTGCCACCCATGAGAAGCCCCCTCAATCCCTTTCCTCCTGGGCTCAGCCAATCTGGCTAGGGTCACCCAGCTTAACCAGCACTCCCACAGACATGGGTTTACGCAACAAATACATGCATGACAATAAAGGACTCTGTGAATGACAGGTCAgatataactgtatatattcaaatttaCAAGCTAGAGCGATTAGATTTCCAGAAATCAAGGCACCGGTGTCCAGTTCAGCGTTACTGGTCTAGCCCCCCCAATAAACGTCAAGTCAGACCTGTGCCATTCATTCCCAGTATTAGCACAACACACGTCATTAAATGGTTAACctatagaaattaaaattaatatatagataGTTTAGGTGTGGCTGTACGAGTACTAAAGACCCCTGCTGTACATGTACAAACAAGGAAGCCCAAACCCTTCAAAATGGATCTCGGTGCATTACAAAAGGACAAAGGTAATGAATCTTGAAAAGGTCTGTTGTGGTTAAAGGTTGGCAAAggagtgtgtgtggtggggtggggggggcggcaaTTCCTGTGACCGACATCACACACTGCGCTGCCAGCAAGGCCAATACCAGGATCCTCACTGCTGGGGGGCCCAAAAGGGTCAAGCCAAAGCCTTCAGCACCTCGACTGGCCACTCCAGTGCGCAATGTCACAGGGTTGCCACCCGTCGCATGGACAATGGAGACGGGCATTTATTGGGGGTGGGAGTCTTTAGTGCATGTGTGGTGCGAGTGCCAGCCTGCTCGAGTGCCTGTTCAATACCAACATGTAGACGCATCAGTGCGCGAGTGGGTGTACACCAGCTGGAGCTCAAGATTGATCTTCAGCCAGTTGTCAGCACTGAGCGATTAGCATCACGAACAGCTGCCAATCAGCTGGGAGGGATGGCGGTTATTCTAAGAGGACTATGGGTCAGAGAGGGCTCTCACTGGGGCTCGGCTTCCAGGTCACCCCCTCAagggaagggaagaaaaaaaaatctccaagTCAATTGAAACGGACAATAATAAGGtcacttgatttatttaaattcagtttttcaaCGTCCCCCCCCATCccaaaaagacaaattaaaatttaaaacagggttttgggggggggaggggggaaaccTGACATGGGCATCTAGAGTAcaggtacagagagagagagtgaacaaAGGGCTAGGAGAAGTCCCAATCAGGCAGGGGTGGGTGGGAAGTCCCCATCCCTCCCCGaagactggggggggggggggggggggggggggatcatcCAATGGGCTCACAGCATGCTGGTGGTCAGCCAGGCAGTCACCACAGCAATGGCAGAGAGCGCAGAGATGTGGGTGGCGGGGGCGGCGTTGCACAGGTCCGTGGCACAGCAGGTCTTGTTCATCTTGTAGAGGGTGGCACCCTGGAAGGTGACATTGGACAGCTGGTTGCAGTTGGCATTTGCCAGGCAGCCCCTCTGGATGATGTCCACAAACCCAg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU135905 lncRNA upstream 25207 1651055 ~ 1651459 (+) True G108632
TU135839 lncRNA upstream 122001 1352818 ~ 1554665 (+) True G108587
TU135860 lncRNA upstream 180958 1494364 ~ 1495708 (+) True G108605
TU135857 lncRNA upstream 188796 1487312 ~ 1487870 (+) True G108602
TU135850 lncRNA upstream 201699 1473372 ~ 1474967 (+) True G108595
TU135894 lncRNA downstream 130050 1808557 ~ 1814610 (+) False G108626
TU136167 lncRNA downstream 211020 1889527 ~ 1890035 (+) True G108831
TU136168 lncRNA downstream 212529 1891036 ~ 1892425 (+) True G108832
TU136169 lncRNA downstream 214356 1892863 ~ 1893487 (+) True G108833
TU136184 lncRNA downstream 273707 1952214 ~ 1953042 (+) True G108847
AMCG00006289 mRNA upstream 14823 1660638 ~ 1661843 (+) True AMCG00006289
AMCG00006288 mRNA upstream 29536 1638059 ~ 1647130 (+) True AMCG00006288
AMCG00006286 mRNA upstream 101848 1573128 ~ 1574818 (+) True AMCG00006286
AMCG00006287 mRNA upstream 130816 1536907 ~ 1545850 (+) True AMCG00006287
AMCG00006281 mRNA upstream 242800 1424407 ~ 1433866 (+) True AMCG00006281
AMCG00006293 mRNA downstream 36976 1715483 ~ 1721110 (+) True AMCG00006293
AMCG00006295 mRNA downstream 51302 1729809 ~ 1734311 (+) True AMCG00006295
AMCG00006294 mRNA downstream 59862 1738369 ~ 1741336 (+) False AMCG00006294
AMCG00006296 mRNA downstream 64535 1743042 ~ 1752407 (+) True AMCG00006296
AMCG00006297 mRNA downstream 74262 1752769 ~ 1753029 (+) True AMCG00006297
TU135836 other upstream 246679 1350383 ~ 1429987 (+) True G108585
TU135810 other upstream 390614 1280701 ~ 1286052 (+) True AMCG00006276
TU135722 other upstream 685844 985873 ~ 990822 (+) False AMCG00006256
TU135656 other upstream 827894 846561 ~ 848772 (+) False AMCG00006246
TU135437 other upstream 885604 774809 ~ 791062 (+) True G108319
TU135921 other downstream 57425 1735932 ~ 1739267 (+) True AMCG00006294
TU135896 other downstream 130050 1808557 ~ 1812675 (+) False G108626
TU136837 other downstream 1682847 3361354 ~ 3365565 (+) False G109309
TU136897 other downstream 1824674 3503181 ~ 3506679 (+) True G109362
TU136948 other downstream 1891532 3570039 ~ 3573709 (+) False AMCG00006379

Expression Profile