RNA id: TU135896


Basic Information

Item Value
RNA id TU135896
length 1290
RNA type TUCP
GC content 0.53
exon number 4
gene id G108626
representative False

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 1637397 ~ 1814610 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAGTgtgaggaaagaaaatgaagtaaAACCTACACGTGTCCTCACACAATGCCAGTCACTCACTCACCCAGCTCAAATAAAGCCCCCAGCAGGCAGTGGTGTTTTTTCTGAAACAGTTTATTACTCTGAACACAACAGACAGGAGAGCTCCGCCGGCCACCCAGCACCTTAACGGTTGGACTTGGCCACTCTCTCCAGCTCGTCCTTCTTCTTGATGGCGTAGGAGTTAGAGGAgccctgagagggagagagaaagttaAGGCACAGTAAAAGCACTGTTACACTAGAGCATTGTAAAAACACTTAAACAGCTcagcattacattatataataagaattacaaaaacaaaatggtcacAAAGCCACTAGACCTAATGAGATGCATAGATAAAAAGACTGATATAGATATAGCAGTGCATATAGATCATGTGTATAGATCTCTGGCACCCGCCTCACCTTGGCAGCGTTGATGAGCTCGTCAGCCAGACACTCTGCGATGGTCTTGATGTTCCTGAAGGCCGCCTCTCTAGCACCAGTGCAGAGCAGCCAGATCGCCGGTTGACCCTGCGCAGGGGCGAGACGTCCACAGCCTGTCTCCTCACGGTGCCGGCGCGGCCGATACGGGTGGAGTCCTCCCGGGGGCCGCTGTTAATGATGGCGTTCACCAGCACCTGCAGGGGGTTCCCCCGGTCAGCAGGTGGATGATCTCGAAGGCGTGCTTGACGATGCGCACGGTCATGAGCTTCTTGCCGTTGTTGCGGCCGTGCATCATCATGGAGTTGGTGAGCCGCTCCACGATGGGGCACTGCGCCTTGCGGAAGCGCTTGGCGGCGTAGCGCCCCCCGGAGTGAGGGAGGTACTTCGCATACTTCTCCTTCACTGCGATtacctgcAGGGAGATGTCGTTGATCTGGACATCGTCGGTGCTCCACTTCCCGAAGAGCTTGATCTCTGGGGTCTCAGCCACAGCTGGGGCGGTCTCCCACTCAGTCATCCTGCACAGGGGGGACAAGGAGGGAGAGGTCAGTACAAGACAGAACCAGATTACAGTTACACCAGTGTTAGTACAGCACACACATGCCGATTTTTTAAAACTGACTGACACTCCCAGATACCTGCATTGTCTTCGAGGCAAGGTGAACTTTAACTGAACAGGTCTTGCTGCTGATCAAGACACCAGGGCCTGCTTATACAACAGTCACGGGGTATGCAGGGCTGTACTGCAGCTCTAGTCTCTACTGTATCCATACAACCAGGTCCACTGTGTACCTTACTGTAACAAGAGCCAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU135890 lncRNA upstream 130050 1676666 ~ 1678507 (+) False G108626
TU135905 lncRNA upstream 157098 1651055 ~ 1651459 (+) True G108632
TU135839 lncRNA upstream 253892 1352818 ~ 1554665 (+) True G108587
TU136167 lncRNA downstream 76852 1889527 ~ 1890035 (+) True G108831
TU136168 lncRNA downstream 78361 1891036 ~ 1892425 (+) True G108832
TU136169 lncRNA downstream 80188 1892863 ~ 1893487 (+) True G108833
TU136184 lncRNA downstream 139539 1952214 ~ 1953042 (+) True G108847
TU136191 lncRNA downstream 178940 1991615 ~ 2011808 (+) True G108854
AMCG00006300 mRNA upstream 2517 1805301 ~ 1806040 (+) True AMCG00006300
AMCG00006302 mRNA upstream 14642 1764374 ~ 1793915 (+) True AMCG00006302
AMCG00006297 mRNA upstream 55528 1752769 ~ 1753029 (+) True AMCG00006297
AMCG00006296 mRNA upstream 56150 1743042 ~ 1752407 (+) True AMCG00006296
AMCG00006294 mRNA upstream 67221 1738369 ~ 1741336 (+) False AMCG00006294
AMCG00006306 mRNA downstream 48304 1860979 ~ 1865306 (+) True AMCG00006306
AMCG00006301 mRNA downstream 64882 1877557 ~ 1880080 (+) True AMCG00006301
AMCG00006303 mRNA downstream 71079 1883754 ~ 1887570 (+) True AMCG00006303
AMCG00006308 mRNA downstream 83830 1896505 ~ 1908086 (+) True AMCG00006308
AMCG00006309 mRNA downstream 229341 2042016 ~ 2045884 (+) True AMCG00006309
TU135921 other upstream 69290 1735932 ~ 1739267 (+) True AMCG00006294
TU135836 other upstream 378570 1350383 ~ 1429987 (+) True G108585
TU135810 other upstream 522505 1280701 ~ 1286052 (+) True AMCG00006276
TU135722 other upstream 817735 985873 ~ 990822 (+) False AMCG00006256
TU135656 other upstream 959785 846561 ~ 848772 (+) False AMCG00006246
TU136837 other downstream 1548679 3361354 ~ 3365565 (+) False G109309
TU136897 other downstream 1690506 3503181 ~ 3506679 (+) True G109362
TU136948 other downstream 1757364 3570039 ~ 3573709 (+) False AMCG00006379
TU136955 other downstream 1786566 3599241 ~ 3599697 (+) False AMCG00006385
TU136960 other downstream 1825068 3637743 ~ 3640661 (+) False AMCG00006387

Expression Profile