RNA id: TU135963


Basic Information

Item Value
RNA id TU135963
length 302
lncRNA type read_through
GC content 0.51
exon number 2
gene id G108682
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 1292038 ~ 1306880 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCCTGACacacagaccctaatacagaccccacagacactcctgacacacagaccctaatacagaccccacagacactcctgacacacagaccctaatacagaccccacagacactcctgacacagAGAGATCAGCAGAGTGTAATAACTCAGGCACTTTGCGACGCACCGGGCTTGTCGTGAGATCTTGACGTCCTCCTGCAGCTCAATAAGTGCAATGTCATAATCATAGAACTCTGGGATCCCCTGGTCTGCCTTCAGTCCTGGGTTGAACTGGGGATGGGTTATGATCCCAATTATTT

Function

GO:

id name namespace
GO:0060841 venous blood vessel development biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU136026 lncRNA downstream 78647 1211290 ~ 1213391 (-) False AMCG00006274
TU136018 lncRNA downstream 90357 1180582 ~ 1201681 (-) False G108717
TU136017 lncRNA downstream 90357 1201296 ~ 1201681 (-) True G108717
TU136001 lncRNA downstream 154086 1134901 ~ 1137952 (-) False AMCG00006266
TU135995 lncRNA downstream 172340 1109651 ~ 1119698 (-) True G108705
TU136056 lncRNA upstream 13818 1320698 ~ 1321213 (-) True G108750
TU136060 lncRNA upstream 21922 1328802 ~ 1332044 (-) True G108752
TU136067 lncRNA upstream 37636 1344516 ~ 1346841 (-) False AMCG00006292
TU136073 lncRNA upstream 43205 1350085 ~ 1397331 (-) True G108756
TU136074 lncRNA upstream 52212 1359092 ~ 1359504 (-) False AMCG00006279
AMCG00006273 mRNA downstream 30459 1248142 ~ 1261579 (-) True AMCG00006273
AMCG00006274 mRNA downstream 75883 1211286 ~ 1216155 (-) True AMCG00006274
AMCG00006272 mRNA downstream 92044 1193270 ~ 1199994 (-) True AMCG00006272
AMCG00006271 mRNA downstream 100957 1181710 ~ 1191081 (-) True AMCG00006271
AMCG00006267 mRNA downstream 112974 1171681 ~ 1179064 (-) True AMCG00006267
AMCG00006277 mRNA upstream 31277 1338157 ~ 1341665 (-) False AMCG00006277
AMCG00006279 mRNA upstream 51517 1358397 ~ 1371414 (-) True AMCG00006279
AMCG00006284 mRNA upstream 167997 1474877 ~ 1493970 (-) True AMCG00006284
AMCG00006285 mRNA upstream 187480 1494360 ~ 1498054 (-) True AMCG00006285
AMCG00006283 mRNA upstream 243563 1550443 ~ 1555554 (-) True AMCG00006283
TU136027 other downstream 75854 1215225 ~ 1216184 (-) False AMCG00006274
TU136000 other downstream 157348 1126562 ~ 1134690 (-) True G108708
TU135631 other downstream 551749 737260 ~ 740289 (-) False AMCG00006245
TU135628 other downstream 556628 731441 ~ 735410 (-) False AMCG00006245
TU135562 other downstream 745892 479582 ~ 546146 (-) False AMCG00006241
TU136062 other upstream 30307 1337187 ~ 1341445 (-) True AMCG00006277
TU136064 other upstream 37636 1344516 ~ 1623374 (-) False AMCG00006292
TU136068 other upstream 43605 1350485 ~ 1352941 (-) False G108755
TU136071 other upstream 43605 1350485 ~ 1554664 (-) True G108755
TU136076 other upstream 61202 1368082 ~ 1510540 (-) False AMCG00006279

Expression Profile