RNA id: TU135995


Basic Information

Item Value
RNA id TU135995
length 1294
lncRNA type inter_gene
GC content 0.34
exon number 7
gene id G108705
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 1109651 ~ 1119698 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATTTCCTTATCTTCATGTATATGTTGAAAGTATCACATtggatttcaatatttttattttagtatctcAGATCTTGCTTAAATTCTGTCAAACATTTGGATATTTCAGGAACCTCGCAAATATGAACTTTATGCAGTTTGCAGACACATAGGGAGTTACAGAGGTGGACATTATAAAGCCTTTATCAAGTCATTTGAAGATGACAACTGGTACAGCTTCAATGATTCTCAAGTTCTTAAGGATGGAATAGATGGTTCAGAAAACATTAAGCAGCACAATGCCCTATTCAAGGTTGAGTCACAGGGATATGTTTTTGCTGCAGGAAAATGCGAAGATTACAGAGGACAGTCAGATTCCACTGCTCCAGGAGACTATaacaatTTGACCATCACAGAAAATACACATACGCAGTACATAAGATGTCCAGATGCGTATTTGGTTATGTACAGGCTAATAATGGAAGAGCAGGACCAAGAAGCTTTAAACCAAAGTCAGCAGAAAGCAGATATGCAGAATTCTGTGAGTCCTGATATTGAATATCCAGTGGGGAAGGAGGAGAAAGCATCCAATCCATTAAACAAGCAGAGGCAGAAGAAAGGTGCAAGGTCAAAAAGGAATCGGAACAGGAAGAATAAGAAATCTaaaaagaggaggaagaagagaaaataatgttaCCACTTTCTGACTGCATTTTGCTCTTAACAGTAATTAGCTTTTTTATGTGGTGTCAGAGTGTGTGGATCTATGCACAACCATAACAGTGTCCCTATAGCATTGCAATTGCTAATAGATATTTCTGGCCAAagttacagttttaattatagTGGTATGGTAGCATTGGAACATATTTATGACTCCTTAAAAGATTGGGGAGACCCAAGGAACACTAGATTCAAACACAAAGAGATGCTTTATATGGAATTAATTGGGAATTATCTATATTTTAAGTCTTCACCATAATGTAAACctcaaattgatttaattgatttaatggaCAGTTTcacaaatagaaataatacattgccACTTATGGGAAGCATGTGATCTGAATCAAAATTGAAAATAGGTTATTGTACTTTGATTTAATctattgttttgatgttttgtaatattttttttatttacctagtttgaaaatgtattgatgtattagataaatacattttattgttttgttttttgtttactgtgtcCATAGAGATAGTACACAAGTTGTGGGACTGCACTGGAAAAGGTTTGACTACCACAATGAGAAtgctaaaatgaaatgttaataaaatatatatttaagata

Function

GO:

id name namespace
GO:0019825 oxygen binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU135975 lncRNA downstream 8359 1092864 ~ 1101292 (-) False G108689
TU135972 lncRNA downstream 10934 1040218 ~ 1098717 (-) False G108689
TU135974 lncRNA downstream 10934 1094724 ~ 1098717 (-) True G108689
TU135942 lncRNA downstream 150973 953292 ~ 958678 (-) True G108664
TU135930 lncRNA downstream 175826 933515 ~ 933825 (-) True G108655
TU136001 lncRNA upstream 15203 1134901 ~ 1137952 (-) False AMCG00006266
TU136018 lncRNA upstream 60884 1180582 ~ 1201681 (-) False G108717
TU136017 lncRNA upstream 81598 1201296 ~ 1201681 (-) True G108717
TU136026 lncRNA upstream 91592 1211290 ~ 1213391 (-) False AMCG00006274
TU135963 lncRNA upstream 172340 1292038 ~ 1306880 (-) True G108682
AMCG00006258 mRNA downstream 36357 1068054 ~ 1073294 (-) True AMCG00006258
AMCG00006260 mRNA downstream 59923 1048178 ~ 1049728 (-) True AMCG00006260
AMCG00006259 mRNA downstream 62141 1042862 ~ 1047510 (-) True AMCG00006259
AMCG00006255 mRNA downstream 208806 896978 ~ 900845 (-) True AMCG00006255
AMCG00006247 mRNA downstream 235157 869356 ~ 874494 (-) False AMCG00006247
AMCG00006266 mRNA upstream 15236 1134934 ~ 1137945 (-) True AMCG00006266
AMCG00006265 mRNA upstream 37029 1156727 ~ 1160200 (-) True AMCG00006265
AMCG00006268 mRNA upstream 43602 1163300 ~ 1170846 (-) True AMCG00006268
AMCG00006267 mRNA upstream 51983 1171681 ~ 1179064 (-) True AMCG00006267
AMCG00006271 mRNA upstream 62012 1181710 ~ 1191081 (-) True AMCG00006271
TU135631 other downstream 369362 737260 ~ 740289 (-) False AMCG00006245
TU135628 other downstream 374241 731441 ~ 735410 (-) False AMCG00006245
TU135562 other downstream 563505 479582 ~ 546146 (-) False AMCG00006241
TU135541 other downstream 713672 395424 ~ 395979 (-) False AMCG00006232
TU135530 other downstream 769703 336736 ~ 339948 (-) True G108379
TU136000 other upstream 6864 1126562 ~ 1134690 (-) True G108708
TU136027 other upstream 95527 1215225 ~ 1216184 (-) False AMCG00006274
TU136062 other upstream 217489 1337187 ~ 1341445 (-) True AMCG00006277
TU136064 other upstream 224818 1344516 ~ 1623374 (-) False AMCG00006292
TU136068 other upstream 230787 1350485 ~ 1352941 (-) False G108755

Expression Profile