RNA id: TU136000


Basic Information

Item Value
RNA id TU136000
length 680
RNA type TUCP
GC content 0.38
exon number 5
gene id G108708
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 1126562 ~ 1134690 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTAGCAGCAGTACAATTCAAAATGACAGGGAATCGCCACATAAAAACGAAAGTAAAAGTACTACAGAAATTAACTCTTACAATTACTATTACAATTTACAAGCTTTAATGCTTGTCATGCAAACTATTGTTTAAACTCCGAAACTGTGTGATACATGTACTCTTCATGGACATCATCGGCTAGAAAaggttaCAATGGTTTATATAACCAGGGAGCAACCTGTTACTTAAACACAGTGTTGCAGACATTCTTCATGGACCCGAAGGTCAGAGATACTATTTGCAGtttgccaGTTGAAAAGGAGgaaagcatttcatttcaactTAAGAAGTTGTTTAAAAATCTAGAGGAGGGACAAAACACTGCTGAAACAACAGGCATCACAACTAGCCTTGGTATAACTTGTGtcttcGAACAACAAGATGCAGAAGAATTTTTCCAGAGGATACTGAATGCAGTTGACAGTGATGTCTCTAAGCTCTACCGGGGCACCTTAATGAACACTACAAAGTGTTTGGGTTGTGAAGAATGCAACACAGACATGAGCAAGTTCCTGGATATTCCGCTTCCTGTAGATATCCTCCATGATTCCAATGAAATCTACAGTGTTGTAAGTACCAACCACTTATATTTATCCTCCAGTTTGAATTGTCTCATTGTCCAAAAGATCAAAGACTGTG

Function

GO:

id name namespace
GO:0002376 immune system process biological_process

KEGG:

id description
ko04612 Antigen processing and presentation

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU135995 lncRNA downstream 6864 1109651 ~ 1119698 (-) True G108705
TU135975 lncRNA downstream 25270 1092864 ~ 1101292 (-) False G108689
TU135972 lncRNA downstream 27845 1040218 ~ 1098717 (-) False G108689
TU135974 lncRNA downstream 27845 1094724 ~ 1098717 (-) True G108689
TU135942 lncRNA downstream 167884 953292 ~ 958678 (-) True G108664
TU136001 lncRNA upstream 211 1134901 ~ 1137952 (-) False AMCG00006266
TU136018 lncRNA upstream 45892 1180582 ~ 1201681 (-) False G108717
TU136017 lncRNA upstream 66606 1201296 ~ 1201681 (-) True G108717
TU136026 lncRNA upstream 76600 1211290 ~ 1213391 (-) False AMCG00006274
TU135963 lncRNA upstream 157348 1292038 ~ 1306880 (-) True G108682
AMCG00006258 mRNA downstream 53268 1068054 ~ 1073294 (-) True AMCG00006258
AMCG00006260 mRNA downstream 76834 1048178 ~ 1049728 (-) True AMCG00006260
AMCG00006259 mRNA downstream 79052 1042862 ~ 1047510 (-) True AMCG00006259
AMCG00006255 mRNA downstream 225717 896978 ~ 900845 (-) True AMCG00006255
AMCG00006247 mRNA downstream 252068 869356 ~ 874494 (-) False AMCG00006247
AMCG00006266 mRNA upstream 244 1134934 ~ 1137945 (-) True AMCG00006266
AMCG00006265 mRNA upstream 22037 1156727 ~ 1160200 (-) True AMCG00006265
AMCG00006268 mRNA upstream 28610 1163300 ~ 1170846 (-) True AMCG00006268
AMCG00006267 mRNA upstream 36991 1171681 ~ 1179064 (-) True AMCG00006267
AMCG00006271 mRNA upstream 47020 1181710 ~ 1191081 (-) True AMCG00006271
TU135631 other downstream 386273 737260 ~ 740289 (-) False AMCG00006245
TU135628 other downstream 391152 731441 ~ 735410 (-) False AMCG00006245
TU135562 other downstream 580416 479582 ~ 546146 (-) False AMCG00006241
TU135541 other downstream 730583 395424 ~ 395979 (-) False AMCG00006232
TU135530 other downstream 786614 336736 ~ 339948 (-) True G108379
TU136027 other upstream 80535 1215225 ~ 1216184 (-) False AMCG00006274
TU136062 other upstream 202497 1337187 ~ 1341445 (-) True AMCG00006277
TU136064 other upstream 209826 1344516 ~ 1623374 (-) False AMCG00006292
TU136068 other upstream 215795 1350485 ~ 1352941 (-) False G108755
TU136071 other upstream 215795 1350485 ~ 1554664 (-) True G108755

Expression Profile