RNA id: TU136056


Basic Information

Item Value
RNA id TU136056
length 402
lncRNA type inter_gene
GC content 0.54
exon number 2
gene id G108750
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 1320698 ~ 1321213 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGGCAGGCGCTCCACACAGAGGCGCAATATCGCAGctcaacacagagagagagagagagagagagagaaagcatctcagtacagagagagaggaagagagagaaaacatctcagcacacagagagagggagagaaagcatctcagtacagagagagggaagggagagGAAGCATCTCAGcacagagagagggaagggatagagagagaaagcatctcagcacagagagagggaagggatagagagagaaagcatctcggcacagagagagggaagggatagagagagaaagcatctcagcacagagagggagggagaggaagcaTCTCCACACGCACGGGAGAGCAGCACAAAGGCACAGCGCAGCGCCACAGGGTCCGCGATGTCCTCAGAGAAGCACGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU135963 lncRNA downstream 13818 1292038 ~ 1306880 (-) True G108682
TU136026 lncRNA downstream 107307 1211290 ~ 1213391 (-) False AMCG00006274
TU136018 lncRNA downstream 119017 1180582 ~ 1201681 (-) False G108717
TU136017 lncRNA downstream 119017 1201296 ~ 1201681 (-) True G108717
TU136001 lncRNA downstream 182746 1134901 ~ 1137952 (-) False AMCG00006266
TU136060 lncRNA upstream 7589 1328802 ~ 1332044 (-) True G108752
TU136067 lncRNA upstream 23303 1344516 ~ 1346841 (-) False AMCG00006292
TU136073 lncRNA upstream 28872 1350085 ~ 1397331 (-) True G108756
TU136074 lncRNA upstream 37879 1359092 ~ 1359504 (-) False AMCG00006279
TU136077 lncRNA upstream 84180 1405393 ~ 1409747 (-) True G108760
AMCG00006278 mRNA downstream 20055 1298837 ~ 1300643 (-) True AMCG00006278
AMCG00006280 mRNA downstream 22728 1293396 ~ 1297970 (-) True AMCG00006280
AMCG00006273 mRNA downstream 59119 1248142 ~ 1261579 (-) True AMCG00006273
AMCG00006274 mRNA downstream 104543 1211286 ~ 1216155 (-) True AMCG00006274
AMCG00006272 mRNA downstream 120704 1193270 ~ 1199994 (-) True AMCG00006272
AMCG00006277 mRNA upstream 16944 1338157 ~ 1341665 (-) False AMCG00006277
AMCG00006279 mRNA upstream 37184 1358397 ~ 1371414 (-) True AMCG00006279
AMCG00006284 mRNA upstream 153664 1474877 ~ 1493970 (-) True AMCG00006284
AMCG00006285 mRNA upstream 173147 1494360 ~ 1498054 (-) True AMCG00006285
AMCG00006283 mRNA upstream 229230 1550443 ~ 1555554 (-) True AMCG00006283
TU136027 other downstream 104514 1215225 ~ 1216184 (-) False AMCG00006274
TU136000 other downstream 186008 1126562 ~ 1134690 (-) True G108708
TU135631 other downstream 580409 737260 ~ 740289 (-) False AMCG00006245
TU135628 other downstream 585288 731441 ~ 735410 (-) False AMCG00006245
TU135562 other downstream 774552 479582 ~ 546146 (-) False AMCG00006241
TU136062 other upstream 15974 1337187 ~ 1341445 (-) True AMCG00006277
TU136064 other upstream 23303 1344516 ~ 1623374 (-) False AMCG00006292
TU136068 other upstream 29272 1350485 ~ 1352941 (-) False G108755
TU136071 other upstream 29272 1350485 ~ 1554664 (-) True G108755
TU136076 other upstream 46869 1368082 ~ 1510540 (-) False AMCG00006279

Expression Profile