RNA id: TU136060


Basic Information

Item Value
RNA id TU136060
length 728
lncRNA type inter_gene
GC content 0.48
exon number 3
gene id G108752
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 1328802 ~ 1332044 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ccgagagacagccagagagagagagagagagagagagagacggttCGTCTGCATGTATGTGAGCGAAAGGGAGAGCCAGCCAGTGCACAATCTCTGAtgctgtgattgtgtttgtgctgaAGTGTGAGTGATTTGTGTGTTcctaggtgtgtgtgtgtgtatctgtctctgcctgtctgtctgtgtgctgatGTGTGAGTGAGTGGATTTTTGTCCCttgaagtgtgtgtttgtgtctgtgtgtgtgtgttagtttgtGTGCCTTTATGCCTCTGTGTTGGTGTCACTGAAGTGTACGtctatgtgagtgtgtgttggagTCTTGGTGTactgaagtgtgtgtttgtgtttcacttCTGCAACTCTGCTACAGCAACAGGATGTGGTGAGaagcagcagcggcagcagcagcggtcTAGCCTTCTATATTCTCACCACGGGTTTCCACAGGACTCACAGACTGTTATTTTGCACAAGgaaaggagagagggggacacggggagaaaacagacacagcaaaataaagacaGTAGTCTCAGCTACAGCGCAGTGAACTGCAGCCCTCCTGGACATTcgggggagaaaataaaaaatacagacacaataaatataaaaataaacacactgaaaatacatatacTATGGAGAATGGGATTGGCCCGTCGGAGGAGTCCTGTGAAGTTAAGATCCAACCAGAGGGCAGCAGAACACATCACCGGACCAATGGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU136056 lncRNA downstream 7589 1320698 ~ 1321213 (-) True G108750
TU135963 lncRNA downstream 21922 1292038 ~ 1306880 (-) True G108682
TU136026 lncRNA downstream 115411 1211290 ~ 1213391 (-) False AMCG00006274
TU136018 lncRNA downstream 127121 1180582 ~ 1201681 (-) False G108717
TU136017 lncRNA downstream 127121 1201296 ~ 1201681 (-) True G108717
TU136067 lncRNA upstream 12472 1344516 ~ 1346841 (-) False AMCG00006292
TU136073 lncRNA upstream 18041 1350085 ~ 1397331 (-) True G108756
TU136074 lncRNA upstream 27048 1359092 ~ 1359504 (-) False AMCG00006279
TU136077 lncRNA upstream 73349 1405393 ~ 1409747 (-) True G108760
TU136089 lncRNA upstream 172154 1504198 ~ 1560390 (-) True G108770
AMCG00006278 mRNA downstream 28159 1298837 ~ 1300643 (-) True AMCG00006278
AMCG00006280 mRNA downstream 30832 1293396 ~ 1297970 (-) True AMCG00006280
AMCG00006273 mRNA downstream 67223 1248142 ~ 1261579 (-) True AMCG00006273
AMCG00006274 mRNA downstream 112647 1211286 ~ 1216155 (-) True AMCG00006274
AMCG00006272 mRNA downstream 128808 1193270 ~ 1199994 (-) True AMCG00006272
AMCG00006277 mRNA upstream 6113 1338157 ~ 1341665 (-) False AMCG00006277
AMCG00006279 mRNA upstream 26353 1358397 ~ 1371414 (-) True AMCG00006279
AMCG00006284 mRNA upstream 142833 1474877 ~ 1493970 (-) True AMCG00006284
AMCG00006285 mRNA upstream 162316 1494360 ~ 1498054 (-) True AMCG00006285
AMCG00006283 mRNA upstream 218399 1550443 ~ 1555554 (-) True AMCG00006283
TU136027 other downstream 112618 1215225 ~ 1216184 (-) False AMCG00006274
TU136000 other downstream 194112 1126562 ~ 1134690 (-) True G108708
TU135631 other downstream 588513 737260 ~ 740289 (-) False AMCG00006245
TU135628 other downstream 593392 731441 ~ 735410 (-) False AMCG00006245
TU135562 other downstream 782656 479582 ~ 546146 (-) False AMCG00006241
TU136062 other upstream 5143 1337187 ~ 1341445 (-) True AMCG00006277
TU136064 other upstream 12472 1344516 ~ 1623374 (-) False AMCG00006292
TU136068 other upstream 18441 1350485 ~ 1352941 (-) False G108755
TU136071 other upstream 18441 1350485 ~ 1554664 (-) True G108755
TU136076 other upstream 36038 1368082 ~ 1510540 (-) False AMCG00006279

Expression Profile