RNA id: TU136068


Basic Information

Item Value
RNA id TU136068
length 754
RNA type TUCP
GC content 0.55
exon number 3
gene id G108755
representative False

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 1350485 ~ 1554664 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

NCTAACAGCTCTCTGCACATAGACAGACTCAGGACACGGGACACTGGACAGTACACCTGTCATCAGTATGTCAATGGAAAGCATTATACATCTGGATTACCTGTTACTCTCTTCCTGCTCTCCATCTCTGTTAGTTCCAGTTCATCTGCGTGTCTGAGGGCCGGAGACAGACTCACTCTGAAGTGTGGGCTGGACTGTGGGGGGGGCGCTGGAAGCTGCTCTGAGACCCCACAGGGATTGACTCTGTCCTGGAGGGACGAGAGCGGAGTCCCACCGAAGGacgagagagacagatacagtATCACAGAGCTCAGGGGAGTCCACAGTCAACTCTCGGTGACACTGCGACAGTCAGACCACAACAAGAGCTGGACTTGTGTCCTGACAGAGCGAGGCGAGATGAAGACCTCTGAGTCCTACACCACTACACTCTCAGACGAGCTGTTCTCCACAGTGGGGCGGCTCCTGCTCCTGTCCTGTGTGGCTCCTGTCAGTCTGGGACCAGGAGAGACACTGCGGTGGACCTACAGACAATCTCGTACCAGCCAGGCCGTGGTGCTGTACAGCTTAAGATCCCTGACTGAAACGCCTCTGAAAGGGACAGTCCCACACAGTGGGAGAGCGGTGATGTCAGCCAACTCCTCACTGCTGATACACAATGTGCAGACGGGGGACGCTGGGCTGTACTGCTGTCAGAGAGACAAGGACTCTGGACCCAAAAAGACCCACAGGACGTTTGCTCTGAACACACTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU136067 lncRNA downstream 3644 1344516 ~ 1346841 (-) False AMCG00006292
TU136060 lncRNA downstream 18441 1328802 ~ 1332044 (-) True G108752
TU136056 lncRNA downstream 29272 1320698 ~ 1321213 (-) True G108750
TU135963 lncRNA downstream 43605 1292038 ~ 1306880 (-) True G108682
TU136026 lncRNA downstream 137094 1211290 ~ 1213391 (-) False AMCG00006274
TU136074 lncRNA upstream 6151 1359092 ~ 1359504 (-) False AMCG00006279
TU136077 lncRNA upstream 52452 1405393 ~ 1409747 (-) True G108760
TU136089 lncRNA upstream 151257 1504198 ~ 1560390 (-) True G108770
TU136091 lncRNA upstream 184003 1536944 ~ 1542361 (-) True G108772
TU136113 lncRNA upstream 308812 1661753 ~ 1663033 (-) True G108790
AMCG00006277 mRNA downstream 8820 1338157 ~ 1341665 (-) False AMCG00006277
AMCG00006278 mRNA downstream 49842 1298837 ~ 1300643 (-) True AMCG00006278
AMCG00006280 mRNA downstream 52515 1293396 ~ 1297970 (-) True AMCG00006280
AMCG00006273 mRNA downstream 88906 1248142 ~ 1261579 (-) True AMCG00006273
AMCG00006274 mRNA downstream 134330 1211286 ~ 1216155 (-) True AMCG00006274
AMCG00006279 mRNA upstream 5456 1358397 ~ 1371414 (-) True AMCG00006279
AMCG00006284 mRNA upstream 121936 1474877 ~ 1493970 (-) True AMCG00006284
AMCG00006285 mRNA upstream 141419 1494360 ~ 1498054 (-) True AMCG00006285
AMCG00006283 mRNA upstream 197502 1550443 ~ 1555554 (-) True AMCG00006283
AMCG00006291 mRNA upstream 242731 1595672 ~ 1599457 (-) True AMCG00006291
TU136062 other downstream 9040 1337187 ~ 1341445 (-) True AMCG00006277
TU136027 other downstream 134301 1215225 ~ 1216184 (-) False AMCG00006274
TU136000 other downstream 215795 1126562 ~ 1134690 (-) True G108708
TU135631 other downstream 610196 737260 ~ 740289 (-) False AMCG00006245
TU135628 other downstream 615075 731441 ~ 735410 (-) False AMCG00006245
TU136076 other upstream 15141 1368082 ~ 1510540 (-) False AMCG00006279
TU136085 other upstream 120537 1473478 ~ 1474950 (-) False AMCG00006284
TU136106 other upstream 293539 1646480 ~ 1660004 (-) True G108784
TU136131 other upstream 369620 1722561 ~ 1724848 (-) True AMCG00006298
TU136165 other upstream 528341 1881282 ~ 1881837 (-) True G108829

Expression Profile