RNA id: TU136071


Basic Information

Item Value
RNA id TU136071
length 911
RNA type TUCP
GC content 0.54
exon number 3
gene id G108755
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 1350485 ~ 1554664 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

NGCCTCAGTGACAGTGCCTTGTGACGGACTGACAGAATATCACAACTCCTATATATCCTGGGTGTTTAATCACAGATCCGAGACAACTGTAGAACTGAGCCGTGGTGGGATGATCACAGACACAGATCCAGACAGAGCTGGCAGACTGAGACTGGGGTCTAACAGCTCTCTGCACATAGACAGACTCAGGACACGGGACACTGGACAGTACAACTGTCATCAGTATGTCAATGGAAAGTATTATACATCTGGATTAACTGTTACTCTCTTCCTGCTCTCCATCTCTGTTAGTTCCAGTTCATCTGCGTGTCTGAGGGCCGGAGACAGACTCACTCTGAAGTGTGGGCTGGACTGTGGGGGGGGCGCTGGAAGCTGCTCTGAGACCCCACAGGGATTGACTCTGTCCTGGAGGGACGAGAGCGGAGTCCCACCGAAGGacgagagagacagatacagtATCACAGAGCTCAGGGGAGTCCACAGTCAACTCTCGGTGACACTGCGACAGTCAGACCACAACAAGAGCTGGACTTGTGTCCTGACAGAGCGAGGCGAGATGAAGACCTCTGAGTCCTACACCACTACACTCTCAGACGAGCTGTTCTCCACAGTGGGGCGGCTCCTGCTCCTGTCCTGTGTGGCTCCTGTCAGTCTGGGACCAGGAGAGACACTGCGGTGGACCTACAGACAATCTCGTACCAGCCAGGCCGTGGTGCTGTACAGCTTAAGATCCCTGACTGAAACGCCTCTGAAAGGGACAGTCCCACACAGTGGGAGAGCGGTGATGTCAGCCAACTCCTCACTGCTGATACACAATGTGCAGACGGGGGACGCTGGGCTGTACTGCTGTCAGAGAGACAAGGACTCTGGACCCAAAAAGACCCACAGGACGTTTGCTCTGAACACACTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU136067 lncRNA downstream 3644 1344516 ~ 1346841 (-) False AMCG00006292
TU136060 lncRNA downstream 18441 1328802 ~ 1332044 (-) True G108752
TU136056 lncRNA downstream 29272 1320698 ~ 1321213 (-) True G108750
TU135963 lncRNA downstream 43605 1292038 ~ 1306880 (-) True G108682
TU136026 lncRNA downstream 137094 1211290 ~ 1213391 (-) False AMCG00006274
TU136113 lncRNA upstream 107089 1661753 ~ 1663033 (-) True G108790
TU136114 lncRNA upstream 110284 1664948 ~ 1670631 (-) True G108791
TU136111 lncRNA upstream 164965 1719629 ~ 1721131 (-) True G108789
TU136135 lncRNA upstream 179531 1734195 ~ 1783566 (-) True G108805
TU136170 lncRNA upstream 331301 1885965 ~ 1886276 (-) True G108834
AMCG00006277 mRNA downstream 8820 1338157 ~ 1341665 (-) False AMCG00006277
AMCG00006278 mRNA downstream 49842 1298837 ~ 1300643 (-) True AMCG00006278
AMCG00006280 mRNA downstream 52515 1293396 ~ 1297970 (-) True AMCG00006280
AMCG00006273 mRNA downstream 88906 1248142 ~ 1261579 (-) True AMCG00006273
AMCG00006274 mRNA downstream 134330 1211286 ~ 1216155 (-) True AMCG00006274
AMCG00006291 mRNA upstream 41008 1595672 ~ 1599457 (-) True AMCG00006291
AMCG00006292 mRNA upstream 45473 1600137 ~ 1637731 (-) True AMCG00006292
AMCG00006290 mRNA upstream 123598 1678262 ~ 1683356 (-) True AMCG00006290
AMCG00006299 mRNA upstream 138579 1693243 ~ 1709505 (-) True AMCG00006299
AMCG00006298 mRNA upstream 168183 1722847 ~ 1723402 (-) False AMCG00006298
TU136062 other downstream 9040 1337187 ~ 1341445 (-) True AMCG00006277
TU136027 other downstream 134301 1215225 ~ 1216184 (-) False AMCG00006274
TU136000 other downstream 215795 1126562 ~ 1134690 (-) True G108708
TU135631 other downstream 610196 737260 ~ 740289 (-) False AMCG00006245
TU135628 other downstream 615075 731441 ~ 735410 (-) False AMCG00006245
TU136106 other upstream 91816 1646480 ~ 1660004 (-) True G108784
TU136131 other upstream 167897 1722561 ~ 1724848 (-) True AMCG00006298
TU136165 other upstream 326618 1881282 ~ 1881837 (-) True G108829
TU136306 other upstream 465337 2020001 ~ 2024143 (-) True AMCG00006313
TU136304 other upstream 543154 2097818 ~ 2130255 (-) False G108938

Expression Profile