RNA id: TU136073


Basic Information

Item Value
RNA id TU136073
length 475
lncRNA type sense_over
GC content 0.41
exon number 3
gene id G108756
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 1350085 ~ 1397331 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCTGTGACACTTCCTCTATGGGGGTCAAGAAGTATTTATTGGAAAACCGCATTATCATCATTATGGTCAGAAACTGCAACAAAATAATATGCAGTCAAATCAAGGCATTTGAAAACAGCTACAGCAGAGCCACAGTCAtccatctaaaaaaaCTTCACCTggcttacaaaaacaaacacaaaatcacaaatacatCTGAGTAGATGTtacaatatacaccgatcagccataacattatgagcactgacaggtgaagtgaataacactgataatctcgttatcatggcacctgtcagtgggtgggatatattaggcagaaagtgaacattttgtcctcagagttgatgtgtaagaagcaggaaaaatgggcagcgtaaggatctgagggactttgacaagggccacattgtgatggctagacgactgggtcagagcatctccaaaactgaaGCTATTGTGgagtgttcctggtctg

Function

GO:

id name namespace
GO:0019220 regulation of phosphate metabolic process biological_process
GO:0051174 regulation of phosphorus metabolic process biological_process
GO:0045936 negative regulation of phosphate metabolic process biological_process
GO:0042325 regulation of phosphorylation biological_process
GO:0042326 negative regulation of phosphorylation biological_process
GO:0010563 negative regulation of phosphorus metabolic process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU136067 lncRNA downstream 3244 1344516 ~ 1346841 (-) False AMCG00006292
TU136060 lncRNA downstream 18041 1328802 ~ 1332044 (-) True G108752
TU136056 lncRNA downstream 28872 1320698 ~ 1321213 (-) True G108750
TU135963 lncRNA downstream 43205 1292038 ~ 1306880 (-) True G108682
TU136026 lncRNA downstream 136694 1211290 ~ 1213391 (-) False AMCG00006274
TU136077 lncRNA upstream 8062 1405393 ~ 1409747 (-) True G108760
TU136089 lncRNA upstream 106867 1504198 ~ 1560390 (-) True G108770
TU136091 lncRNA upstream 139613 1536944 ~ 1542361 (-) True G108772
TU136113 lncRNA upstream 264422 1661753 ~ 1663033 (-) True G108790
TU136114 lncRNA upstream 267617 1664948 ~ 1670631 (-) True G108791
AMCG00006277 mRNA downstream 8420 1338157 ~ 1341665 (-) False AMCG00006277
AMCG00006278 mRNA downstream 49442 1298837 ~ 1300643 (-) True AMCG00006278
AMCG00006280 mRNA downstream 52115 1293396 ~ 1297970 (-) True AMCG00006280
AMCG00006273 mRNA downstream 88506 1248142 ~ 1261579 (-) True AMCG00006273
AMCG00006274 mRNA downstream 133930 1211286 ~ 1216155 (-) True AMCG00006274
AMCG00006284 mRNA upstream 77546 1474877 ~ 1493970 (-) True AMCG00006284
AMCG00006285 mRNA upstream 97029 1494360 ~ 1498054 (-) True AMCG00006285
AMCG00006283 mRNA upstream 153112 1550443 ~ 1555554 (-) True AMCG00006283
AMCG00006291 mRNA upstream 198341 1595672 ~ 1599457 (-) True AMCG00006291
AMCG00006292 mRNA upstream 202806 1600137 ~ 1637731 (-) True AMCG00006292
TU136062 other downstream 8640 1337187 ~ 1341445 (-) True AMCG00006277
TU136027 other downstream 133901 1215225 ~ 1216184 (-) False AMCG00006274
TU136000 other downstream 215395 1126562 ~ 1134690 (-) True G108708
TU135631 other downstream 609796 737260 ~ 740289 (-) False AMCG00006245
TU135628 other downstream 614675 731441 ~ 735410 (-) False AMCG00006245
TU136085 other upstream 76147 1473478 ~ 1474950 (-) False AMCG00006284
TU136106 other upstream 249149 1646480 ~ 1660004 (-) True G108784
TU136131 other upstream 325230 1722561 ~ 1724848 (-) True AMCG00006298
TU136165 other upstream 483951 1881282 ~ 1881837 (-) True G108829
TU136306 other upstream 622670 2020001 ~ 2024143 (-) True AMCG00006313

Expression Profile