RNA id: TU136113


Basic Information

Item Value
RNA id TU136113
length 1261
lncRNA type inter_gene
GC content 0.50
exon number 2
gene id G108790
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 1661753 ~ 1663033 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCCAGGGTTTCAATGCGTGAATTTAATAGAGGGAGGGGAAACCGACAGACGAATCACTCCTTCAGCAGGAAggacggacagacggacagagacgggtcactttttaaaaaaaacaagtttattgCGACCGACTGGACAATCGCAGGggcaacaacacaaataaactcCCATTACTATAATCATCATAGCTATtagaataataatcatcataataataatgttgagagtaataataaaataaactgcagccCGAGAAGTCTCCCTCAGGATCCTAATTTCTGTTGCGAGCGAGAGAGCTGAACGCAGTGACGTTTGGTAGAGAGAGCCTGCAGGTATGTACAATCACAACCCAGctactgcaacacacacacaataaacagtCAGACATTAAcagccctggccctggagagacagtccagtccagcgggGTCTCGGCCCTGGTCATGGAGAGAGACGGTCCAGTATCTCGCTCTCATTTACTAGAGTgcactgaacaaaaacaaacagaaaccgTACAGTCAGCCGTCTTTATCCCAGGACAGCGGAAGCACTGCGTCTCcacaggaccagggctggagaccagGAAGTAAAATTCTGAATCAtctttatctatttttattataacaatCATTAGGACTATGGGGGACTGTCAATAAACCTTTGAAGAACCTTAAAGAACAATCCATATTCGTCTGAAACTGCAGAgataagagtgtgtgtgtgtgcgtgtgtgtgtgtgtgtggcctcCAATGTCAggcagtgggggtggggtgtggagagagagagagagagagagagaggggagagtaAGCTGTTTTGCATGGGAAATAAAAAGAGCgaaagagagggacagacagctCAATCTAAGACTCCGATGTCTGCGTGTCCGTCTGTTGCGCACGGTGTCCCAAGTGTGCCGTCACGGGTGCGAAGGTCAAAAACCACTGGAGCGTGTTTCAGCCCCCCGGCACGGCACGACACGGCATACTGAGGTTGTACTGTCCCACACTGCCTCCATCGCGTCGCCACGAGGAACTGTGGGGTgttgctgtactgcactgtgacGGGCTGGGTTTGGGTGTGTTGTGTTGAACTGTGCAGAGAGtttgggctgggctgggctgggcagctctcctctcctctcctctcctctcctctcctctcctcctctagCGTATGGCTTTGACTGGGCTCTTGAAGCTGCTGGctgcctggagctggagctggtagGCCATGGGGTGGATCTTAAACCCAtacagc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU136089 lncRNA downstream 101363 1504198 ~ 1560390 (-) True G108770
TU136091 lncRNA downstream 119392 1536944 ~ 1542361 (-) True G108772
TU136077 lncRNA downstream 252006 1405393 ~ 1409747 (-) True G108760
TU136073 lncRNA downstream 264422 1350085 ~ 1397331 (-) True G108756
TU136074 lncRNA downstream 302249 1359092 ~ 1359504 (-) False AMCG00006279
TU136114 lncRNA upstream 1915 1664948 ~ 1670631 (-) True G108791
TU136111 lncRNA upstream 56596 1719629 ~ 1721131 (-) True G108789
TU136135 lncRNA upstream 71162 1734195 ~ 1783566 (-) True G108805
TU136170 lncRNA upstream 222932 1885965 ~ 1886276 (-) True G108834
TU136316 lncRNA upstream 389958 2052991 ~ 2057622 (-) True G108948
AMCG00006292 mRNA downstream 24022 1600137 ~ 1637731 (-) True AMCG00006292
AMCG00006291 mRNA downstream 62296 1595672 ~ 1599457 (-) True AMCG00006291
AMCG00006283 mRNA downstream 106199 1550443 ~ 1555554 (-) True AMCG00006283
AMCG00006285 mRNA downstream 163699 1494360 ~ 1498054 (-) True AMCG00006285
AMCG00006284 mRNA downstream 167783 1474877 ~ 1493970 (-) True AMCG00006284
AMCG00006290 mRNA upstream 15229 1678262 ~ 1683356 (-) True AMCG00006290
AMCG00006299 mRNA upstream 30210 1693243 ~ 1709505 (-) True AMCG00006299
AMCG00006298 mRNA upstream 59814 1722847 ~ 1723402 (-) False AMCG00006298
AMCG00006304 mRNA upstream 145623 1808656 ~ 1818368 (-) True AMCG00006304
AMCG00006305 mRNA upstream 203526 1866559 ~ 1870731 (-) True AMCG00006305
TU136106 other downstream 1749 1646480 ~ 1660004 (-) True G108784
TU136064 other downstream 38379 1344516 ~ 1623374 (-) False AMCG00006292
TU136071 other downstream 107089 1350485 ~ 1554664 (-) True G108755
TU136076 other downstream 151213 1368082 ~ 1510540 (-) False AMCG00006279
TU136085 other downstream 186803 1473478 ~ 1474950 (-) False AMCG00006284
TU136131 other upstream 59528 1722561 ~ 1724848 (-) True AMCG00006298
TU136165 other upstream 218249 1881282 ~ 1881837 (-) True G108829
TU136306 other upstream 356968 2020001 ~ 2024143 (-) True AMCG00006313
TU136304 other upstream 434785 2097818 ~ 2130255 (-) False G108938
TU136502 other upstream 661098 2324131 ~ 2329991 (-) True AMCG00006328

Expression Profile