RNA id: TU136114


Basic Information

Item Value
RNA id TU136114
length 3750
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G108791
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 1664948 ~ 1670631 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

NNNNNTTTTGCAGGTTTCTTCTTTATGACCACATcagctcaaacaaacaaaaagcaaacaacaaccCAAAATTAATTAGTATAAGGAAGTGCAGTTTCAGCTTCAGTTAAGCTTATATAAAAGGCCACCTGGAGGCCTGGCGCTGCACTGCGCCCCCCTGCTGCACCGCACCGAGACTCAGTAATACCTCACTGCATCATTCCTCCCTGTGCCTGCCCTGTAGTCAATGCCACTCTCTTGCACATTAAGCACCACGCAGcagtaacacacaaacacacactcatttcAAGACATGCACAGTGCGTAATAAACACATCTGCACTATAACACACGCACTGTAATACATGCATTAGAATACACACATTGTAACACACTTAAGCACTACAATACTTTATAATGCACACgctatatattacacacatatatatatatatcagtcacCAATATGTACCCCCTGTGTGTCCTGTCAGGATACTTGTATTACCTgctcagcacacacacatatccacTGACCTGGGCGGTCGAACTGTGTAGCTCAGGGGACATCATAACCGAattccccctccacccccccccgaGCTGAAACTCTGCTGTTTCCCAGGCAAAGTTCAAAATCAGAAATATTGTGTTTACTTTCCCTGCTCTGTAGATTTGTGTTGATCTCAAACATTGTTCAATACTTTGAAATCAGGTtcttggtttaatttgtttgtagtttttttattattcttactcttttaatgaatgtaaaaaatgcctttattaaaattacaactTGATTAACAAATTCACTCTTGCAATGCATTTTTGGGAACAAAATCCTAGACTGTTTATTTGagtatatttatgaaaatagtTGGGATATTGAATACagaatagaaatatatatttctgttaaagGAAGTACCAGCCTTATACTGAATGGGCTAATGGGTCATTAGGATGTCTTGTACTTTAAAATTAGACAAATCTGGATGTCTTTGAAGAAACTGACTTCCAGACTAATacgtttaatttaattatcaaatcatgaataatacatattttacatgacaatgatcaatattaataacatgGTTTATTGATAATCATATGTTCTCCAATGGTATGAGGTTTCAGGACATTTGATGAGATATTGAGAAATTGGGcaatattttgagaaaatacTCTTACATTTccagattatttaaatatttaactctTATGGCACCTGCTCATCACTCCTACAGATCAATACTAATATCctatgttaaaaatacacatatataccaAGTGCaccaaaaacaatcaattaaaatgcatattagcAATACATTATTGCTTTTCACTTTATTGAGTCTCTAATAAACCAAACAGAATGTCTCCTTAACAATGTTTACAAGTAAGATTCggttaggttttgttttggtgtgaatgtgaatttaaaaatccTCTTCTGATTACATCAAAAACAATGATATGTTCGGCACAGAATTTGATTTGGGAAGAACCAGTATTCCCTATTCATTCATGCAGATCAGTAAAATGACTAATTCAACATCTGATCAGAGCAATAGcaataaagattaataaaatcacaatagttaaaatgtataaaacccaTCACGCTTAAAAGAGTCTGAACCACCTCACATCCGAGGGTTATAGAGAGGACCCACATTTGCGGACGCTACAGAATACAtgtattgagagagagatggatactTAGACGTACAGTTAGATCATTATAGAGTCGTAGATTTAGAGATATATATTGTGGTAGAGTCCGCCCAGCACTGTAGAAACCATTCTgttcttaataaaaaataaattacaccaaTTGTCCAGCTGCATAACCATGTCCCTGCAACACAATCAGATGTCTTCTCTACAGAAGCACATGCATCTCTGCACTTTTATCCGTCACAGCTTCACTTTCCCGGGCGCACACGCGTAGCGCTGTGACACACAACATGCAGGACCGCTAACCCaccacacacatatgcataggACATACATGCAAGTGTTGACTATATCTAGACCATACGAAATGTAGACTAtggttaattgcatttatttgacGTCGCTACTTTGTATGACATACGACAATCATCACGTACACATGACTGCATACTATAAATTCAGCATCCAGTCTTGAGTCTCTATATTGATCACAGAGCTAAACTATTATATAATGTTACGTATTCCTTGCTGACTAAGCAAGATTTATGACGCATATTTGTGGCCATGTACACATCGACACATTATTTCCACATAACCTTTACTGAGCTCCAGATCACAGATGCCGATGGGTTCCTGTGCACATCGCACCGCTGCCTTTCGATCACTCGATAAGTCGCAATACCGGATACTGACCAGCAGGTGTCACTGTGGAGAGAGGATCGAGTGCTTCGAAGCAGTGAACCTTTTATCCATAAAATAGCTTCAAATGTTTCAATGCTATAAGCAgattcgaagatggatggatggatgtttcaATGCTTCGGAAAGCTTTGTTTCACCCACCACTAGAGAAATAATCAATCACCTGAATAAGGCTAATggctgataaataaataaattagctgACAGAACATCCAATCAGAGAAAGAAGGAAATGCGGCCATATTCTCATGCTGCTCTCCTGCAACCCTTCAGTTGATCACAGCTGATTAACCAAGAGCCACGGGGCCCTATTTGGACCAGCCTGAATCAGAAATGCTTAGAGGGGCAGACAAATCGTCCAGAATACCAAAGATTTGATCCACAACCATAATGTATGTTCTTGGCatgtttgtctttctgttttaGACCTTTAGCACTTTACAATTGCTGTCTTTAATGCTGCATAAatgttcattaatttaaaatgtgggcAATTAATTTGTATCACAGGTTACCTTTTGGTAGCCTATTTGACTACCACACATATTAATATGTCCACCCCTGACTTGGATAGAAAaagtttaatatgaaaaataaaaaataaaaatagtgaGAAGCTTGTGTgtactgattttatttactAACGATACAATATGTGAgcatgtttctgttttgatttataaaactAGTTCTGTGCCTTTTCTGACaggtttattttatgaaaaagacCACTCCACTGTTAAATCCTGTGCAGGCTCCTAGGATATGACATAGGATCTGGTGCAGGATCTTTCAATTTACCTTGTAGGATCCAGCTCAGGATCTTGTACAATATCCTGTCACAGGAACTTATAAGACCCTACAGGATCTTAAACAGGATCCTGTCCAAGATTTCTACCAGGGTATCTATCAGTTGTCTATCTGACATGACTCAATCCTGGTATTTCAACAGAAAGTTCAGATACACCATAATACCTCAGGTAGATTGACTGACCAATTTATTTAGTATTGAAAACATGGACCGGAATCAGCTTTGCTAACAGACCTGCCTGCTTGAGTAACTGTAATTTTGACAGCAGCACCCCTGGATGTATGACAGTGTAAATAATCCATTGCcacctcacctcacctcacACCGCTCACAAGCTATTTGATTCCCAGGACAAACAACCAGGGaaatcagcaaaaaaaaaaaaaaaaagttgcaaacAGTAAACAGAAGACCCTACACAACCCCCGAGGGGACATATGGAGGAAAAATAAAGCTAAAGTAAAGTGTTCCCTTGCAAAATAATGACTTGTTGGATgcatttactgtttgtttttttgtgctgtaGATTATTTTGTGcccaataaaaatgaattatatattttgtaattttggag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU136113 lncRNA downstream 1915 1661753 ~ 1663033 (-) True G108790
TU136089 lncRNA downstream 104558 1504198 ~ 1560390 (-) True G108770
TU136091 lncRNA downstream 122587 1536944 ~ 1542361 (-) True G108772
TU136077 lncRNA downstream 255201 1405393 ~ 1409747 (-) True G108760
TU136073 lncRNA downstream 267617 1350085 ~ 1397331 (-) True G108756
TU136111 lncRNA upstream 48998 1719629 ~ 1721131 (-) True G108789
TU136135 lncRNA upstream 63564 1734195 ~ 1783566 (-) True G108805
TU136170 lncRNA upstream 215334 1885965 ~ 1886276 (-) True G108834
TU136316 lncRNA upstream 382360 2052991 ~ 2057622 (-) True G108948
TU136289 lncRNA upstream 427187 2097818 ~ 2130255 (-) False G108938
AMCG00006292 mRNA downstream 27217 1600137 ~ 1637731 (-) True AMCG00006292
AMCG00006291 mRNA downstream 65491 1595672 ~ 1599457 (-) True AMCG00006291
AMCG00006283 mRNA downstream 109394 1550443 ~ 1555554 (-) True AMCG00006283
AMCG00006285 mRNA downstream 166894 1494360 ~ 1498054 (-) True AMCG00006285
AMCG00006284 mRNA downstream 170978 1474877 ~ 1493970 (-) True AMCG00006284
AMCG00006290 mRNA upstream 7631 1678262 ~ 1683356 (-) True AMCG00006290
AMCG00006299 mRNA upstream 22612 1693243 ~ 1709505 (-) True AMCG00006299
AMCG00006298 mRNA upstream 52216 1722847 ~ 1723402 (-) False AMCG00006298
AMCG00006304 mRNA upstream 138025 1808656 ~ 1818368 (-) True AMCG00006304
AMCG00006305 mRNA upstream 195928 1866559 ~ 1870731 (-) True AMCG00006305
TU136106 other downstream 4944 1646480 ~ 1660004 (-) True G108784
TU136071 other downstream 110284 1350485 ~ 1554664 (-) True G108755
TU136076 other downstream 154408 1368082 ~ 1510540 (-) False AMCG00006279
TU136085 other downstream 189998 1473478 ~ 1474950 (-) False AMCG00006284
TU136068 other downstream 312007 1350485 ~ 1352941 (-) False G108755
TU136131 other upstream 51930 1722561 ~ 1724848 (-) True AMCG00006298
TU136165 other upstream 210651 1881282 ~ 1881837 (-) True G108829
TU136306 other upstream 349370 2020001 ~ 2024143 (-) True AMCG00006313
TU136304 other upstream 427187 2097818 ~ 2130255 (-) False G108938
TU136502 other upstream 653500 2324131 ~ 2329991 (-) True AMCG00006328

Expression Profile