RNA id: TU136135


Basic Information

Item Value
RNA id TU136135
length 1020
lncRNA type inter_gene
GC content 0.51
exon number 2
gene id G108805
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 1734195 ~ 1783566 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTTGTCACAGTGAGTTTGACGTTTCCCAGAAACTCCATGATGTCTCTGCCTCTGTAATAGCAGTCGTACAGGCCTTCGTCAGAGAGCAGGGTGCTTTTAATGGTCAGAGAGAAGTCcccctgtctgatcttctctcTGGAGACCTCAGCTCTGTCCTCGAAGCCTTGGCCAGGATAGGCTCTACCATAGATTGAATCCAGGACCGGTCTGGAGGTTTTCCACTTGATGTGCATTTTCTCCTCAGGGATCCCAGCAGCTGCAGCTCCATCACAGGGCAGAGACACAGAGTCTCCCACTGATACAGACAGttggacaggagaggaggacactgggagagagagagagaaagggagagagacagagagagagagagagagagagaagagacagagagcaaaACATATTAGAAATGAACTAatgctttagtttattttctccataGCGATTTAATTAATCCGTGTCCAACACACCCTTCCCAAtaacagtacaaatacaaaacatagagcggaggtgtgtgtgtgaaagagagagagaaaagggggagACCATTTCTAAATATTCCCACAAATCCATCTAGAAAAAGCTACAAAAAGAGACTAACCCCGaggatatttaatttactttgggAGGGGGATGTACAGTAAGACCTGGAATCTCTCAGGGGGGAGAATACAAAACAGTACAGATCGAAGAGTATAAAAGAGCAGACACTATTATCATGTCAGTTAATCCTCCCTCTGGGGGTCCGCAGGTGGCAGGACAGGTCGGAACCCCCCCGCCTCGGTCTTCTGTAGCTGCGGTTGGCTGGGCTGGAGTTTCTGCTGCCGCTCAGCCCCGAATGGGTCGTGGCCCGTGTTCTACGCCTTGTGGTTGGTGGCTGGGTGGGTAAGGCAGGGGAGGTGGTTAGATCTCTGGCTTGCGGTTTATAAGGAGGCAGAAGGAGGagagccccccccccagctTGGCCGCCTCACTGCAGGCTGTGGGTAGCAGGGTGTAGTCTGTGAGCTTCTGGAAGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU136111 lncRNA downstream 13064 1719629 ~ 1721131 (-) True G108789
TU136114 lncRNA downstream 63564 1664948 ~ 1670631 (-) True G108791
TU136113 lncRNA downstream 71162 1661753 ~ 1663033 (-) True G108790
TU136089 lncRNA downstream 173805 1504198 ~ 1560390 (-) True G108770
TU136091 lncRNA downstream 191834 1536944 ~ 1542361 (-) True G108772
TU136170 lncRNA upstream 102399 1885965 ~ 1886276 (-) True G108834
TU136316 lncRNA upstream 269425 2052991 ~ 2057622 (-) True G108948
TU136289 lncRNA upstream 314252 2097818 ~ 2130255 (-) False G108938
TU136288 lncRNA upstream 344227 2127793 ~ 2130255 (-) False G108938
TU136294 lncRNA upstream 344227 2127793 ~ 2130255 (-) True G108938
AMCG00006298 mRNA downstream 10793 1722847 ~ 1723402 (-) False AMCG00006298
AMCG00006299 mRNA downstream 24690 1693243 ~ 1709505 (-) True AMCG00006299
AMCG00006290 mRNA downstream 50839 1678262 ~ 1683356 (-) True AMCG00006290
AMCG00006292 mRNA downstream 96464 1600137 ~ 1637731 (-) True AMCG00006292
AMCG00006291 mRNA downstream 134738 1595672 ~ 1599457 (-) True AMCG00006291
AMCG00006304 mRNA upstream 25090 1808656 ~ 1818368 (-) True AMCG00006304
AMCG00006305 mRNA upstream 82993 1866559 ~ 1870731 (-) True AMCG00006305
AMCG00006307 mRNA upstream 147068 1930634 ~ 1932402 (-) True AMCG00006307
AMCG00006314 mRNA upstream 207736 1991302 ~ 1999290 (-) True AMCG00006314
AMCG00006315 mRNA upstream 227796 2011362 ~ 2016934 (-) True AMCG00006315
TU136131 other downstream 9347 1722561 ~ 1724848 (-) True AMCG00006298
TU136106 other downstream 74191 1646480 ~ 1660004 (-) True G108784
TU136071 other downstream 179531 1350485 ~ 1554664 (-) True G108755
TU136076 other downstream 223655 1368082 ~ 1510540 (-) False AMCG00006279
TU136085 other downstream 259245 1473478 ~ 1474950 (-) False AMCG00006284
TU136165 other upstream 97716 1881282 ~ 1881837 (-) True G108829
TU136306 other upstream 236435 2020001 ~ 2024143 (-) True AMCG00006313
TU136304 other upstream 314252 2097818 ~ 2130255 (-) False G108938
TU136502 other upstream 540565 2324131 ~ 2329991 (-) True AMCG00006328
TU137277 other upstream 2381368 4164934 ~ 4165600 (-) True G109633

Expression Profile