RNA id: TU136165


Basic Information

Item Value
RNA id TU136165
length 556
RNA type TUCP
GC content 0.47
exon number 1
gene id G108829
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 1881282 ~ 1881837 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cacacaaaGTCATACATAgtcaaacacacagatacacacagacgcacacaatcacccacacacagatgcacacaaagATGCacaaagtcacacacacagacacacacaatcacacacagacatacatagtCATACATAgtcaaacacacagatacacacagacaggcaaacacacatatacacacccacatacacacacacacacacacagtcaaacacacagacacacacacaatcacacacaaagacacacacagacacacacacacacacacacagtcaaacacacagatacacacagacgcacacacagacacacacagacacacattgtcaaacacacagacacacacacacacacacagtcaaacacaaggatacacacagacaaacacacagacgcacacagacacacacaatctcactcagacacacaattacacaacagGGCCATTCACAGTGACGCACACAGtcacgcacacagacactctcTGGCATCTCCAGTCTTGGGCAACTCTCTCCGATTCCCTGTCCCGGCGCAGCTGTCTGCCCTGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU136135 lncRNA downstream 97716 1734195 ~ 1783566 (-) True G108805
TU136111 lncRNA downstream 160151 1719629 ~ 1721131 (-) True G108789
TU136114 lncRNA downstream 210651 1664948 ~ 1670631 (-) True G108791
TU136113 lncRNA downstream 218249 1661753 ~ 1663033 (-) True G108790
TU136089 lncRNA downstream 320892 1504198 ~ 1560390 (-) True G108770
TU136170 lncRNA upstream 4128 1885965 ~ 1886276 (-) True G108834
TU136316 lncRNA upstream 171154 2052991 ~ 2057622 (-) True G108948
TU136289 lncRNA upstream 215981 2097818 ~ 2130255 (-) False G108938
TU136288 lncRNA upstream 245956 2127793 ~ 2130255 (-) False G108938
TU136294 lncRNA upstream 245956 2127793 ~ 2130255 (-) True G108938
AMCG00006305 mRNA downstream 10551 1866559 ~ 1870731 (-) True AMCG00006305
AMCG00006304 mRNA downstream 62914 1808656 ~ 1818368 (-) True AMCG00006304
AMCG00006298 mRNA downstream 157880 1722847 ~ 1723402 (-) False AMCG00006298
AMCG00006299 mRNA downstream 171777 1693243 ~ 1709505 (-) True AMCG00006299
AMCG00006290 mRNA downstream 197926 1678262 ~ 1683356 (-) True AMCG00006290
AMCG00006307 mRNA upstream 48797 1930634 ~ 1932402 (-) True AMCG00006307
AMCG00006314 mRNA upstream 109465 1991302 ~ 1999290 (-) True AMCG00006314
AMCG00006315 mRNA upstream 129525 2011362 ~ 2016934 (-) True AMCG00006315
AMCG00006313 mRNA upstream 139057 2020894 ~ 2021865 (-) False AMCG00006313
AMCG00006316 mRNA upstream 145299 2027136 ~ 2034235 (-) True AMCG00006316
TU136131 other downstream 156434 1722561 ~ 1724848 (-) True AMCG00006298
TU136106 other downstream 221278 1646480 ~ 1660004 (-) True G108784
TU136071 other downstream 326618 1350485 ~ 1554664 (-) True G108755
TU136076 other downstream 370742 1368082 ~ 1510540 (-) False AMCG00006279
TU136085 other downstream 406332 1473478 ~ 1474950 (-) False AMCG00006284
TU136306 other upstream 138164 2020001 ~ 2024143 (-) True AMCG00006313
TU136304 other upstream 215981 2097818 ~ 2130255 (-) False G108938
TU136502 other upstream 442294 2324131 ~ 2329991 (-) True AMCG00006328
TU137277 other upstream 2283097 4164934 ~ 4165600 (-) True G109633
TU137807 other upstream 4132267 6014104 ~ 6016943 (-) False AMCG00006491

Expression Profile