RNA id: TU136167



Basic Information


Item Value
RNA id TU136167
length 509
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G108831
representative True

Chromosome Information


Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 1889527 ~ 1890035 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


AAACGAAAGCCGAACGCAAACAAAGGACTGCAGTGAATATGGcgatttatttctttatttgattggacaataaaaatacaaagtggGGTGTGTAATACTAAAACCTTTACTTCCCAAATACGGTAAAAGCGATAAgggtttgtattattattattattattagtagtagtagtagtcggCATTGTGTGTGCAATGCAGTGGATAGCTGCTCTCCGGTGTGTCCACTCGGTGTCCATCGCTGTGTTCCTGCTGTCCTGAGAGACGCCGCTGCGTGAGTACCTGTGTGAGCCGCACTGGGGTGTCTATAGGCGTGTGTTGGTAAGGGGGAGGTCCAgcacctccgtgaagttggcaccccatataattaaataatcaccaaaactattccattcatttgagctgtgtttgtgctgatttgtgccgCAAAATGAACATTTCTGCTGGTTTGGTTTTCAAGATATTAAGCATTCTTTTTTGGGCtgtgtgacgtcactctccaccccatctcG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU135895 lncRNA upstream 74917 1637397 ~ 1814610 (+) True G108626
TU135894 lncRNA upstream 74917 1808557 ~ 1814610 (+) False G108626
TU135890 lncRNA upstream 211020 1676666 ~ 1678507 (+) False G108626
TU135905 lncRNA upstream 238068 1651055 ~ 1651459 (+) True G108632
TU135839 lncRNA upstream 334862 1352818 ~ 1554665 (+) True G108587
TU136168 lncRNA downstream 1001 1891036 ~ 1892425 (+) True G108832
TU136169 lncRNA downstream 2828 1892863 ~ 1893487 (+) True G108833
TU136184 lncRNA downstream 62179 1952214 ~ 1953042 (+) True G108847
TU136191 lncRNA downstream 101580 1991615 ~ 2011808 (+) True G108854
TU136194 lncRNA downstream 118052 2008087 ~ 2033572 (+) True G108856
AMCG00006303 mRNA upstream 1957 1883754 ~ 1887570 (+) True AMCG00006303
AMCG00006301 mRNA upstream 9447 1877557 ~ 1880080 (+) True AMCG00006301
AMCG00006306 mRNA upstream 24221 1860979 ~ 1865306 (+) True AMCG00006306
AMCG00006300 mRNA upstream 83487 1805301 ~ 1806040 (+) True AMCG00006300
AMCG00006302 mRNA upstream 95612 1764374 ~ 1793915 (+) True AMCG00006302
AMCG00006308 mRNA downstream 6470 1896505 ~ 1908086 (+) True AMCG00006308
AMCG00006309 mRNA downstream 151981 2042016 ~ 2045884 (+) True AMCG00006309
AMCG00006311 mRNA downstream 170164 2060199 ~ 2068535 (+) True AMCG00006311
AMCG00006312 mRNA downstream 178715 2068750 ~ 2073323 (+) True AMCG00006312
AMCG00006310 mRNA downstream 190497 2080532 ~ 2089002 (+) True AMCG00006310
TU135896 other upstream 76852 1808557 ~ 1812675 (+) False G108626
TU135921 other upstream 150260 1735932 ~ 1739267 (+) True AMCG00006294
TU135836 other upstream 459540 1350383 ~ 1429987 (+) True G108585
TU135810 other upstream 603475 1280701 ~ 1286052 (+) True AMCG00006276
TU135722 other upstream 898705 985873 ~ 990822 (+) False AMCG00006256
TU136837 other downstream 1471319 3361354 ~ 3365565 (+) False G109309
TU136897 other downstream 1613146 3503181 ~ 3506679 (+) True G109362
TU136948 other downstream 1680004 3570039 ~ 3573709 (+) False AMCG00006379
TU136955 other downstream 1709206 3599241 ~ 3599697 (+) False AMCG00006385
TU136960 other downstream 1747708 3637743 ~ 3640661 (+) False AMCG00006387

Expression Profile