RNA id: TU136168


Basic Information

Item Value
RNA id TU136168
length 1390
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G108832
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 1891036 ~ 1892425 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TAGTGTTCATTTTGggtcttttcatacatttcaacatatggagaaaaataaatacaacgaCGAACGTGATCGTTATAAGGGGTCTCCACGTTACTAAAAAAGTCGAAACATAGATTAGTCTTAATTTGATAGCTAGACTAATCTCATGCAAGTTAGTAAAAAGTTAACTTGGTTTTGGACAAAACCAAGATCCAGGCATCAATTGACAAGTTTGTGAATTGACTTTTCCAGGCGGACAAGAGCCGACATACAATACAGACATACGGCCGGCATTGATAGTctagtttatttattgtgaaaccACCGGCAAGCTGTGTCTTAGCCTATTTGCACAACCGACGTATTTTGAAAGTATATCAAATTCAGGTAATAGCGAAGCTGTCAgtttcattactttatattcatataataaatatataaatggtaattaaatggtaatctgcatgagaaataaaaaaatgaataagaaatcGGTTATAACGATCATCCGCTTAGTCATCAATTTGACCCGGACGGACGTGTAAAGCAATTGGTCGGGAACCTGTCACCCTTGGGACTTGCAcgttttgttgatttattattaattgtttttcattatttcgtTTTGAGCACTTTATTTTGGTTGGACTACTTATTTACttcactattattttctttttaatttgattgtacGTATTCACGTTTTTAAAACCACTCGCTCTcgcttttattgtattttctatttttatgttgaGCGCTCTTTTATAATTTCTTTTGTTTCTCACGCCGCAGCTCAGCCAAGGGCCCAGTGAGACGGACGGTAATAGAGATTTGGGGCCCCTGTGTTGCTTGCTGTTAAACCTTTTGTGCTTTTATATTTCTCTGGATCTTCACACGAGAGCAGCAGAGCCTCCAGGGGGAGCAGAGCAGCAAGGGGCCGGGAGGCGCAGGCGGGACACTGGAGATCAGGGCCCCTGTCCGAGGACCAGCCACGGGACTGGAGGCTGCTGCTCCGCCGGCTGTGCTGTTGCAATTATGTAGGAGCTCCTGTTACTCGACtggctgtttcttttctctctgttgtccttctgtttttttattattttttgaggTATTGCGTTTGAAGGCGGGATTTCTATCAAGAGGCTCGCCTGCCGCTCCAGTGGAGGACTCGAGTGGGAGCTCTGGTGGACGAGTTCAGtatttcatttgttgttttaaattctttttAACCTTTGTATGAAACGTGGgaagtaattgtattaaattattgaaaccCATCCCTTTGTACTGTTCTGCTGCAACTGGTGTGTGGACCGCTGGATAAAAAAATCTTGGAAGAGGTATTTTTGTAGTTGGTTGTGGCTGCTCGGGGTGTTGCAGCCCTAAGACTCCTGATACTCAACAGCCG

Function

GO:

id name namespace
GO:0004953 icosanoid receptor activity molecular_function
GO:0004954 prostanoid receptor activity molecular_function
GO:0004955 prostaglandin receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU136167 lncRNA upstream 1001 1889527 ~ 1890035 (+) True G108831
TU135895 lncRNA upstream 76426 1637397 ~ 1814610 (+) True G108626
TU135894 lncRNA upstream 76426 1808557 ~ 1814610 (+) False G108626
TU135890 lncRNA upstream 212529 1676666 ~ 1678507 (+) False G108626
TU135905 lncRNA upstream 239577 1651055 ~ 1651459 (+) True G108632
TU136169 lncRNA downstream 438 1892863 ~ 1893487 (+) True G108833
TU136184 lncRNA downstream 59789 1952214 ~ 1953042 (+) True G108847
TU136191 lncRNA downstream 99190 1991615 ~ 2011808 (+) True G108854
TU136194 lncRNA downstream 115662 2008087 ~ 2033572 (+) True G108856
TU136219 lncRNA downstream 205924 2098349 ~ 2128000 (+) True G108878
AMCG00006303 mRNA upstream 3466 1883754 ~ 1887570 (+) True AMCG00006303
AMCG00006301 mRNA upstream 10956 1877557 ~ 1880080 (+) True AMCG00006301
AMCG00006306 mRNA upstream 25730 1860979 ~ 1865306 (+) True AMCG00006306
AMCG00006300 mRNA upstream 84996 1805301 ~ 1806040 (+) True AMCG00006300
AMCG00006302 mRNA upstream 97121 1764374 ~ 1793915 (+) True AMCG00006302
AMCG00006308 mRNA downstream 4080 1896505 ~ 1908086 (+) True AMCG00006308
AMCG00006309 mRNA downstream 149591 2042016 ~ 2045884 (+) True AMCG00006309
AMCG00006311 mRNA downstream 167774 2060199 ~ 2068535 (+) True AMCG00006311
AMCG00006312 mRNA downstream 176325 2068750 ~ 2073323 (+) True AMCG00006312
AMCG00006310 mRNA downstream 188107 2080532 ~ 2089002 (+) True AMCG00006310
TU135896 other upstream 78361 1808557 ~ 1812675 (+) False G108626
TU135921 other upstream 151769 1735932 ~ 1739267 (+) True AMCG00006294
TU135836 other upstream 461049 1350383 ~ 1429987 (+) True G108585
TU135810 other upstream 604984 1280701 ~ 1286052 (+) True AMCG00006276
TU135722 other upstream 900214 985873 ~ 990822 (+) False AMCG00006256
TU136837 other downstream 1468929 3361354 ~ 3365565 (+) False G109309
TU136897 other downstream 1610756 3503181 ~ 3506679 (+) True G109362
TU136948 other downstream 1677614 3570039 ~ 3573709 (+) False AMCG00006379
TU136955 other downstream 1706816 3599241 ~ 3599697 (+) False AMCG00006385
TU136960 other downstream 1745318 3637743 ~ 3640661 (+) False AMCG00006387

Expression Profile