RNA id: TU136169


Basic Information

Item Value
RNA id TU136169
length 625
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G108833
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 1892863 ~ 1893487 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AAGATGAAAAGCTTCAACTATCTCCATTTCTTCTGAACCTGTTTATCCTGTCCAATCATCCCATCGTGGTCCTTGCATAATGCAATAACCATTGTGAACATAAGCTGCACTTGTATCAAGTCCCACACTAACTAATCGAGCAACGCAGTGGTCTTAACGATGTACTCACTGAGGTAAAGTTAGtctactttttactttgaataaactcCTAAAGCATGATGGTAATAAACGAGATGTAATACTTGGTTCAGCGATGGAccagaacacacacattatattaaGTACCAATATACACGAGGTGAATTCAAACAAGTGCTACCCGAGCACAGATACAGGACATATGGGATTTGGATTTGAGGCTTGAAGTTACTGCcaatgatcaaactgtcaatattaaaagaaaaaacaacgaCAGTAACGGTAAGAAACCCGCACCGAGAGCACAGACGAACGAGTCAGAAAATGACGAGATGGGGTAAATGCATGACTGACGTCACAGATGCGGGAgataattgtgttatttctatgtaaagGGAATTAGttagattgtttcttttaacggcacaaaccggcacaaatcgaGCCAAACGAATGGCACCGATTAGGAGCGATTTGAGCGAGANNN

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU136168 lncRNA upstream 438 1891036 ~ 1892425 (+) True G108832
TU136167 lncRNA upstream 2828 1889527 ~ 1890035 (+) True G108831
TU135895 lncRNA upstream 78253 1637397 ~ 1814610 (+) True G108626
TU136184 lncRNA downstream 58727 1952214 ~ 1953042 (+) True G108847
TU136191 lncRNA downstream 98128 1991615 ~ 2011808 (+) True G108854
TU136194 lncRNA downstream 114600 2008087 ~ 2033572 (+) True G108856
TU136219 lncRNA downstream 204862 2098349 ~ 2128000 (+) True G108878
TU136226 lncRNA downstream 234831 2128318 ~ 2130263 (+) True G108884
AMCG00006303 mRNA upstream 5293 1883754 ~ 1887570 (+) True AMCG00006303
AMCG00006301 mRNA upstream 12783 1877557 ~ 1880080 (+) True AMCG00006301
AMCG00006306 mRNA upstream 27557 1860979 ~ 1865306 (+) True AMCG00006306
AMCG00006300 mRNA upstream 86823 1805301 ~ 1806040 (+) True AMCG00006300
AMCG00006302 mRNA upstream 98948 1764374 ~ 1793915 (+) True AMCG00006302
AMCG00006308 mRNA downstream 3018 1896505 ~ 1908086 (+) True AMCG00006308
AMCG00006309 mRNA downstream 148529 2042016 ~ 2045884 (+) True AMCG00006309
AMCG00006311 mRNA downstream 166712 2060199 ~ 2068535 (+) True AMCG00006311
AMCG00006312 mRNA downstream 175263 2068750 ~ 2073323 (+) True AMCG00006312
AMCG00006310 mRNA downstream 187045 2080532 ~ 2089002 (+) True AMCG00006310
TU135896 other upstream 80188 1808557 ~ 1812675 (+) False G108626
TU135921 other upstream 153596 1735932 ~ 1739267 (+) True AMCG00006294
TU135836 other upstream 462876 1350383 ~ 1429987 (+) True G108585
TU135810 other upstream 606811 1280701 ~ 1286052 (+) True AMCG00006276
TU135722 other upstream 902041 985873 ~ 990822 (+) False AMCG00006256
TU136837 other downstream 1467867 3361354 ~ 3365565 (+) False G109309
TU136897 other downstream 1609694 3503181 ~ 3506679 (+) True G109362
TU136948 other downstream 1676552 3570039 ~ 3573709 (+) False AMCG00006379
TU136955 other downstream 1705754 3599241 ~ 3599697 (+) False AMCG00006385
TU136960 other downstream 1744256 3637743 ~ 3640661 (+) False AMCG00006387

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU241868 True 10362 lncRNA 0.36 3 CI01000050 119647 ~ 130806 (-)