RNA id: TU136194


Basic Information

Item Value
RNA id TU136194
length 2443
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G108856
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 2008087 ~ 2033572 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AACGCTACACAATGAAGTTGgttttacacaaacatttaagtgtagcatactgtacatacaacTTGGTGTTGTTGGTAATTTGTGAAAAGCTGATGGAAATAGTTGCCTCAAGTAGAGCAGGCacaatattttttacagtgcaGGTTTTACACAAACCCCAGAGAACTTGTCACCACCTATGGgtgctaaattaaaaacacctaAATTACACCCACTAATATTTCCCCCCGGGCAAGCTCAAGGACCCGAAGGCACCACAAGATGGATGGTAAGGTAAGAATAAACCGTTTATTACACAGTTTACACTGTTACAGGGCACAAAGTCTGATCAGTTAATAGCACACACAGGATATCACAATGACTTACAGGACACAATATAGTtaatactaaaattaaaatgcctttaaatcACCCAGGGTgcctaaaataaaaccaataaaaagtataatgaaagctaataaaagtaataatataaatatacaataactaGCTCAATCTCACTATATAGGCAAGTCAAAAATCAATAGAGGGAAGTCCTGTACCAGGAAATTGGTAGAGAGATGTCCTGTGCAAAATGCTTTTTCAAACCTTTTGCGGGTCGCTTAGTGCTGAATCCTCTGGTCCCGTCCGGTCTTCGTTTAGCAATGTGTAAACCACAGTAAGGAAATCTTTTGAAGTTGGATCTCTGCCGTCACCCTCTGCCTTTCCCTCCTGCCCTGGTCATTGCAGGTTATTTTTGCAGCTGTTCTCCTCCCGACTGCTCTGCTCGCTTGCTGTATATCTTTCAGTGTACACCCTGAGAGTGGAGACTCCTAGGCTTTTATAGACGGTTTGCTGGATTAGCAGGCGTCGGTGAAGATGATTCATTGGGAGAACACTGGGGAATCTATGTGGGAATGTCGACCAGCGGCATGCGCCTGGCCATTAACTAATAATCCCATCACCcaattaataaagtaattaaataaaaatatacaataaaaccaccacattgtaaacaatttcaaataatgaaagcaaaagAAGTGATCATATAAAATAAGTGCAACAGCAATATAAGGGAAAGAAAAGATTAGTGATTATCAGCATCACGCACCACTGTGACACACAACGCAATGGCAACCGCTCCTGCTTCCCTCCAATTAGCTTATAGGCCTGCCATTCCAAAAAAGGTTACAATATAGCCGggttaacaaaagaaaatacaaacgAAAACAATACAGACAGTAACATCTTGTCTCCTTATTTCATGACCAACACCAACATGGACACAGCAGCCCTCAGCAAATACAAGGAGAGACATACAATACGGGCACAGCCCAGCTTAATATACAGGACCTTAACactcaggaaaacaaaagaaacaacttCACACTGTGCTATGGCTTTTCAGTGCTCAGggctttccccctctctctctctcacagctcctctccctcctgtTGGGTGAAGCCGCATGAGTAGACAGGCTGCACCTGTGGAAGATCAGCTAATTACACCCCCCAGGTGCACTGTGAGAGCCAACGTCACGGATTCCTGTTGCtcaaattattttgtcttttcctcCCCacaattatacaatgtaatcCTATCCAAAGTAATCCAAAATACACAGTGGTGTGTAATggccaaaaaacaaagaactgaaaatgaaaaaggattGTGCTCAAATGGAAAAAACTCCTCAGACACACCATCCTCTGTGATTAAAAAGATAAGTTGCTTTGTGTCGATGCTAACTCTGTCCTTGTCCATCTCCTCTGCTTCCCTGGCAGCTCCAGGGTGTCTCAGTCTGGGCCCCTGTACtctactatagtccacacagcactggctccagttTGGACCCTATACTACAGTGTACTGTCCTCCACACAGCGCTGGCCCTGTAATTCGTATTCCTGCGTTTTAACTTCCCTCTTTTTATACAACACACCAAGCACAGCAGCCAAGGGTAAGAgcaagagcaaaataaaataatagttctTTGTCCTTGTGGCTCCAGCATCtgtgaaatagaaaaaatgttttaagagaatgtttactaaaatatatatttttctgactGATCTGTgataacacactgactgactgacacactgactgagtgactgactgactgacacactgacacactgactgactgactgactgactgatacctTGCCGTACAGTTCCATTGCGAAGGCGGAGGTGGTGCTGTTGACATCGATGGCGCCGGTGTCTCGCAGGCGGGTCAGGAAGTCCTGTGGGCTGGTGCTACGCCGGGCCGTGCCAATCAGGAACTGGACCACGCAGCGGTCACTCAGCCCCAGGACAGAGTGCAGCTTGTCACTCACCCACTGCTCCAGATTGGCCAttctgggggagagagagagtgaagaggGGAGGTAGCGAGGGAAAGGGGCGATagagaagagaggaagagagagggggtgggtgtcag

Function

GO: NA

KEGG:

id description
ko04660 T cell receptor signaling pathway

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU136184 lncRNA upstream 55045 1952214 ~ 1953042 (+) True G108847
TU136169 lncRNA upstream 114600 1892863 ~ 1893487 (+) True G108833
TU136168 lncRNA upstream 115662 1891036 ~ 1892425 (+) True G108832
TU136167 lncRNA upstream 118052 1889527 ~ 1890035 (+) True G108831
TU135894 lncRNA upstream 193477 1808557 ~ 1814610 (+) False G108626
TU136219 lncRNA downstream 64777 2098349 ~ 2128000 (+) True G108878
TU136226 lncRNA downstream 94746 2128318 ~ 2130263 (+) True G108884
TU136237 lncRNA downstream 126405 2159977 ~ 2252346 (+) True G108890
TU136236 lncRNA downstream 216995 2250567 ~ 2289455 (+) True G108889
TU136264 lncRNA downstream 226370 2259942 ~ 2262497 (+) True G108914
AMCG00006308 mRNA upstream 100001 1896505 ~ 1908086 (+) True AMCG00006308
AMCG00006303 mRNA upstream 120517 1883754 ~ 1887570 (+) True AMCG00006303
AMCG00006301 mRNA upstream 128007 1877557 ~ 1880080 (+) True AMCG00006301
AMCG00006306 mRNA upstream 142781 1860979 ~ 1865306 (+) True AMCG00006306
AMCG00006300 mRNA upstream 202047 1805301 ~ 1806040 (+) True AMCG00006300
AMCG00006309 mRNA downstream 8444 2042016 ~ 2045884 (+) True AMCG00006309
AMCG00006311 mRNA downstream 26627 2060199 ~ 2068535 (+) True AMCG00006311
AMCG00006312 mRNA downstream 35178 2068750 ~ 2073323 (+) True AMCG00006312
AMCG00006310 mRNA downstream 46960 2080532 ~ 2089002 (+) True AMCG00006310
AMCG00006317 mRNA downstream 100784 2134356 ~ 2137701 (+) True AMCG00006317
TU135896 other upstream 195412 1808557 ~ 1812675 (+) False G108626
TU135921 other upstream 268820 1735932 ~ 1739267 (+) True AMCG00006294
TU135836 other upstream 578100 1350383 ~ 1429987 (+) True G108585
TU135810 other upstream 722035 1280701 ~ 1286052 (+) True AMCG00006276
TU135722 other upstream 1017265 985873 ~ 990822 (+) False AMCG00006256
TU136837 other downstream 1327782 3361354 ~ 3365565 (+) False G109309
TU136897 other downstream 1469609 3503181 ~ 3506679 (+) True G109362
TU136948 other downstream 1536467 3570039 ~ 3573709 (+) False AMCG00006379
TU136955 other downstream 1565669 3599241 ~ 3599697 (+) False AMCG00006385
TU136960 other downstream 1604171 3637743 ~ 3640661 (+) False AMCG00006387

Expression Profile