RNA id: TU136237


Basic Information

Item Value
RNA id TU136237
length 1351
lncRNA type read_through
GC content 0.58
exon number 3
gene id G108890
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 2159977 ~ 2252346 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGAGAGCGCCTCTTTCTCCTGTGGGCAGCCTCTGAGCCTCTGTCTGTACAGCAGGGCAGCTGTGACTGTGTGGTTTAACCCTGCGGGCGCCGGCGCCTCTCTCCCAGTGTGTGCTGTAGAGGGCGGCACCGTGACCCCTGACCCTGCCTATGGGCCCCGAGTCTCAGCGCAGGAGCAGGAGGTCACACTGTCTGCACTGACCTTCACTGACCAGGGCTCCTACACAGTGCTGGACTCCCAGAGCAGAGCGACCATCAGCACTGTGAACGTCACTGTGACAGcTCACAGTGACTCCCTCACCCTGCAGTCTGGAGccgccctctccctccccctgttCACTGCAGAGCCAGTGGAGGTGCTGTTTGCTGATACAGGAGAGGGATCCTCTATCTCAGTGTGCGCTGTGGAGAGGGGCGCAGCGAGCCGCCCTGGCCCCGGGTACGAGCACAGAGTGTCAGTGCAGAGCGGCTCTCTGACCCTGCGCTCACTCACAGCAGCTGACCAGGGAAACTACACAGTGAGGGACTGCTGCAGTCCCTCACTGTGTAGTTTCCCTGGTCAGTTGCTGTGAGTGAGCACAGGGTCAGACAGCCGCTCTGCACTGACACTCTGTGCTCGTACCCGGTGTCAGGGTGGCTCACTGCGCCCCTCTCCACAGcgcacactgagacagaggAGTTGGACCCTTGGCTAGAGAACAGCACCTCCACTGGCTCAGCTGTGTACAGGGGGAGTGTGAGATTGGCTCCAGACCGCAGGGTGAGGGAGTCACTGTGAGCTGAGAGAAATGgacacagagcagagattaATGTCACCCATCAGTCATTCATTACAGCTCTTACAagtgtctgcctgcctgtggtCCTGGTTGTCTAGCTGGGTTTCAATTTCTTTTTGTACTTGTGTTGAACTtgtgcctgtgcctgtgtgtgtgaagccAGGGAGCCTCTCTCTAACAGACTGCAGGCCTGATTGGACACCTGTGGAAAGGCACCTCCATCAGAAGATCAGGCCTTACCTGTAAAAGTGAGATCAACACGTGTCAGGAAAATCAACCTTGCATCCCCTCCCTCATAAAAGCACTCGTACAGGCCTTCATCAGAGAGCAGGGTGCCGCGGATGGTCAGAGAGAAGTCCCCCCGTCTGACCTTCTCTCTGGGGACCTCAACTCTGCCCTCAAAGCCTTCCCCTAAAGAGACTGATGCATTGTGACTCTCATAGACGAGCTGACCCTTCGTACTCCACTGGATGTAGAGTTTCTCCTCAGGAATCCCAGCAGCTACAGCTCCATCACAGGGCAGAGAAGCAGAGTGCCCCACTGACACGGACACTGGGACAGAAGCAGAGGACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU136226 lncRNA upstream 29714 2128318 ~ 2130263 (+) True G108884
TU136219 lncRNA upstream 31977 2098349 ~ 2128000 (+) True G108878
TU136194 lncRNA upstream 126405 2008087 ~ 2033572 (+) True G108856
TU136191 lncRNA upstream 148169 1991615 ~ 2011808 (+) True G108854
TU136184 lncRNA upstream 206935 1952214 ~ 1953042 (+) True G108847
TU136264 lncRNA downstream 7596 2259942 ~ 2262497 (+) True G108914
TU136373 lncRNA downstream 40351 2292697 ~ 2292896 (+) True G108987
TU136392 lncRNA downstream 98408 2350754 ~ 2356238 (+) True G109004
TU136402 lncRNA downstream 150557 2402903 ~ 2403151 (+) True G109010
TU136404 lncRNA downstream 183712 2436058 ~ 2452829 (+) True G109011
AMCG00006317 mRNA upstream 22276 2134356 ~ 2137701 (+) True AMCG00006317
AMCG00006310 mRNA upstream 70975 2080532 ~ 2089002 (+) True AMCG00006310
AMCG00006312 mRNA upstream 86654 2068750 ~ 2073323 (+) True AMCG00006312
AMCG00006311 mRNA upstream 91442 2060199 ~ 2068535 (+) True AMCG00006311
AMCG00006309 mRNA upstream 114093 2042016 ~ 2045884 (+) True AMCG00006309
AMCG00006327 mRNA downstream 113946 2366292 ~ 2371085 (+) True AMCG00006327
AMCG00006330 mRNA downstream 139373 2391719 ~ 2396364 (+) True AMCG00006330
AMCG00006334 mRNA downstream 275885 2528231 ~ 2539840 (+) True AMCG00006334
AMCG00006337 mRNA downstream 337038 2589384 ~ 2594077 (+) True AMCG00006337
AMCG00006338 mRNA downstream 346908 2599254 ~ 2605484 (+) True AMCG00006338
TU135896 other upstream 347302 1808557 ~ 1812675 (+) False G108626
TU135921 other upstream 420710 1735932 ~ 1739267 (+) True AMCG00006294
TU135836 other upstream 729990 1350383 ~ 1429987 (+) True G108585
TU135810 other upstream 873925 1280701 ~ 1286052 (+) True AMCG00006276
TU135722 other upstream 1169155 985873 ~ 990822 (+) False AMCG00006256
TU136837 other downstream 1109008 3361354 ~ 3365565 (+) False G109309
TU136897 other downstream 1250835 3503181 ~ 3506679 (+) True G109362
TU136948 other downstream 1317693 3570039 ~ 3573709 (+) False AMCG00006379
TU136955 other downstream 1346895 3599241 ~ 3599697 (+) False AMCG00006385
TU136960 other downstream 1385397 3637743 ~ 3640661 (+) False AMCG00006387

Expression Profile