RNA id: TU136294


Basic Information

Item Value
RNA id TU136294
length 2063
lncRNA type sense_over
GC content 0.50
exon number 2
gene id G108938
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 2097818 ~ 2130255 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGAGCCCTGTGGGGGGGCTGTGGTTTGGTAATTGTCCCAGAGGGGGACGGTAACGAGTGTGAGGGGCAGCAGCACTAATGgggtctctctctccacaggtcTCTCACAGCCAGGAACCTGcactggggggggggcaaaacTCCCCAGCTCTCCCAGTGGGGCTGTGCCGGTGACACAGTTTTAGTTTCAAACAAACACTAGAACTACAGAATTaccaaataaaagtaatattaacaaataaacacaacccAAATAAAATAAGGATTTAAAAGAATGAGGTGACTATTGCAAATTGTTTGTTCAAAGTGTTACAACGTTGCACTTTGCTTCCTGCAAGTGAAGCACTAGAGTGGACTGGAATGTCTTCAAACAGGTCCGCTCAACGGCCGTTGTTctggaaatgtgttgatgctACAGCTGTGAGCGTCCTGACAGACACCTAGTCCAATCTCACAACAAGTTTATTCATTTTGGCTGCAGTTTTTtaagcacaatttaaaaaaaatatatatataatattttaaattgccaGTGTCAAAAAGTCAGCACGGTGAGGTGGAATACCGTTTCCCGGCCCAGCCCAGAAACCCCGCCCccattgccccccccccacccccgaccaTGAATTTCCAAGCCTGGTGAAGGAGGAAGGAGGTGACAGGAGACAGTCCCAGGTATTTGTCTTTGTTACTCCCCTCCCCCAGCGTTAGTCAACATCAGGACAAGACAGTCCTgtcacagtcacacagacagacagtcagagaCATACAGTCAGTccagtcacacagacagacatacagtcAGTCCAGTCAGACATACAGTCAGTccagtcacacagacagacagacagacagacagtccagtcacacagacagacaaactgaCAGTCAGACAGTCCAGCCACAGAGATGCGGTCAGACAACAGACAGTCCAGTANNNNNNNNNNccagtcacacagacagacagacaacagaCAGTCCAGTATATAGGTTATCAGGAAATTGTGCTCTTCAATTATCAATATCTGGCCAAAAAAACCTGTATCAGTTGGGCTCTAGTGTTTACTTAGTGATCCAACCAGGTCCTCAACGGTGGAGCAGGCAGAAGATGGCAGGAAGTCACAATGACTGTGGAGGCCGAGGAAAGCTGCAGCAGGAAAGGACACACAGTCGTCAGTTAGAATCCCGTGAGtaataacagagagagaggaatggacTATTGAATTGAACTCCTCAGTATTAGCATTGCATGATTTACTCCTCTTCAGATGTTCTTCTTTCCCCCTTGTCCTTTTAAACGATGTCTGACTAGAGTTTTATGTTGATTAAGATTGACGAGCTGGACGTGTCGGTGCAGAGGTGAGACGCAGACTTATACActcacattcaaataaacacactgcCCTCAAAATCACACATTcgcacactctcactctcaaacactcactgacacactcttCAAATACTCTCCcactcacattcacacactcactcacatttccagtctctctctctctctcactctcaaacatttacacacacgcacacacacacacacacacacatccccacAGTGGTGCCCCAGTGTCCCGGCTCTGCCTCTGTCTGATCCCCAGTCCtcccctgtcctctctctgcaGGCCATGAGGAGAGCGCCTCTCTCTCATGTGGGCAGCCCCTGAGCCTCCGTCTGTATAGCAGGGCAGCTGTGACTGTGTGGTTTAACCCTGCGGGCGCCGGTGCCTCTTTTCCAGTGTGTGCTGTAGAGGGCGGCACCGTGACCCCTGACCCTGCCTATGGGCCCCGAGTCTCAGGGCAGGAGCAGGAGGTCACACTGTCTGCACTGACCTTCACTGACCAGGGCTCCTACACAGTGCTGGACTCCCAGAGCAGAGCGACCATCAGCACTGTGAACGTCACTGTGACAGcTCACAGAGACTCCCTCACCCTGCGGTCTGGAGCCGCCCTCTCCCTCCGCCTGTTCACTGCTGAGCCAGTGGAggtgctgtttgctgcaggagagggagcctctgtctcagtgtgcgCTGTGGAGAGGGGCGCAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU136316 lncRNA downstream 70171 2052991 ~ 2057622 (-) True G108948
TU136170 lncRNA downstream 241517 1885965 ~ 1886276 (-) True G108834
TU136135 lncRNA downstream 344227 1734195 ~ 1783566 (-) True G108805
TU136111 lncRNA downstream 406662 1719629 ~ 1721131 (-) True G108789
TU136114 lncRNA downstream 457162 1664948 ~ 1670631 (-) True G108791
TU136514 lncRNA upstream 216267 2346522 ~ 2390552 (-) True G109090
TU136517 lncRNA upstream 220499 2350754 ~ 2356238 (-) True G109091
TU136519 lncRNA upstream 220499 2350754 ~ 2356238 (-) False G109091
TU136520 lncRNA upstream 220499 2350754 ~ 2356238 (-) False G109091
TU136528 lncRNA upstream 264494 2394749 ~ 2397990 (-) True G109099
AMCG00006322 mRNA downstream 24904 2099167 ~ 2102889 (-) True AMCG00006322
AMCG00006320 mRNA downstream 28644 2097573 ~ 2099149 (-) True AMCG00006320
AMCG00006316 mRNA downstream 93558 2027136 ~ 2034235 (-) True AMCG00006316
AMCG00006313 mRNA downstream 105928 2020894 ~ 2021865 (-) False AMCG00006313
AMCG00006315 mRNA downstream 110859 2011362 ~ 2016934 (-) True AMCG00006315
AMCG00006319 mRNA upstream 6569 2136824 ~ 2140157 (-) True AMCG00006319
AMCG00006325 mRNA upstream 76352 2206607 ~ 2208884 (-) True AMCG00006325
AMCG00006326 mRNA upstream 87776 2218031 ~ 2254916 (-) True AMCG00006326
AMCG00006329 mRNA upstream 147892 2278147 ~ 2300524 (-) True AMCG00006329
AMCG00006328 mRNA upstream 194250 2324505 ~ 2329809 (-) False AMCG00006328
TU136306 other downstream 103650 2020001 ~ 2024143 (-) True AMCG00006313
TU136165 other downstream 245956 1881282 ~ 1881837 (-) True G108829
TU136131 other downstream 402945 1722561 ~ 1724848 (-) True AMCG00006298
TU136106 other downstream 467789 1646480 ~ 1660004 (-) True G108784
TU136085 other downstream 652843 1473478 ~ 1474950 (-) False AMCG00006284
TU136502 other upstream 193876 2324131 ~ 2329991 (-) True AMCG00006328
TU137277 other upstream 2034679 4164934 ~ 4165600 (-) True G109633
TU137807 other upstream 3883849 6014104 ~ 6016943 (-) False AMCG00006491
TU137903 other upstream 4655058 6785313 ~ 6785851 (-) True G110140
TU137983 other upstream 4948134 7078389 ~ 7088985 (-) True G110195

Expression Profile